New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5447841 =	38 (1.630)	3 (0.140)	3/230	NT	7.9%	intergenic (+14/‑231)	hemL/PP_4785	glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein
	?	NC_002947	5447926 =	36 (1.710)					intergenic (+99/‑146)	hemL/PP_4785	glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein

CCACCTGATGCTCGACGGTGGCGTGTACCTGGCACCGAGCGCATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGA  >  NC_002947/5447692‑5447984                                                                                                                                                      |                                                                                                                                                ccACCTGATGCTCGACGGTGGCGTGTACCTGGCACCGAGCGCATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTAc                                                                                                                                                 <  1:121884/150‑1 (MQ=255)      tGATGCTCGACGGTGGCGTGTACCTGGCACCGAGCGCATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGcc                                                                                                                                            >  1:595174/1‑150 (MQ=255)                              tGGCACCGAGCGCATTCGAAGCGGGCCTTACCTCCATCGCCCATGGCGACCAGGAGCTGCAGATCACACTGGATGCCGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCATGTACCGGACTCTTCGTGAGGCAAACCACTCCTa                                                                                                                    >  2:34148/1‑150 (MQ=255)                              tGGCACCGAGCACATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTa                                                                                                                    >  1:264855/1‑150 (MQ=255)                                     gAGCGCATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCaa                                                                                                             <  1:251826/150‑1 (MQ=255)                                           aTTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGc                                                                                                       <  1:180967/150‑1 (MQ=255)                                                     cgCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCt                                                                                             >  2:439874/2‑150 (MQ=255)                                                      gCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCtt                                                                                            <  1:376221/150‑1 (MQ=255)                                                       cTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTg                                                                                           >  1:59789/1‑150 (MQ=255)                                                            ccTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGa                                                                                      <  2:59789/150‑1 (MQ=255)                                                                cATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTCGGAGCgg                                                                                  <  1:504398/150‑1 (MQ=255)                                                                             gACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGaa                                                                     <  2:595174/150‑1 (MQ=255)                                                                              aCAATGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCGGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAag                                                                    <  1:98534/150‑1 (MQ=255)                                                                                 aaagttttactcgaatttctgcttggttggggaagtcagctgattgtgtgtgagtatttattgcctgtgCCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                 >  1:234262‑M1/70‑150 (MQ=255)                                                                                  ggAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                >  1:265026/1‑150 (MQ=255)                                                                                       tGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCGAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGca                                                           >  1:248062/1‑150 (MQ=255)                                                                                        gCAGATCACCCTGGATGCGGCTGATAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAg                                                                                        <  1:348387/120‑1 (MQ=255)                                                                                        gCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAg                                                                                        >  2:348387/1‑120 (MQ=255)                                                                                        gCAGAGCACCCTGACTGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcac                                                          <  1:34148/150‑1 (MQ=255)                                                                                               aCCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAACCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCcgcg                                                                       >  2:547404/1‑130 (MQ=255)                                                                                               aCCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAACCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCcgcg                                                                       <  1:547404/130‑1 (MQ=255)                                                                                                       ttggttggggaagtcagctgattgtgtgtgcgtatttattgcctgtgCCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcaca                                                         >  1:365342‑M1/48‑136 (MQ=255)                                                                                                       ttggttggggaagtcagctgattgtgtgtgcgtatttattgcctgtgCCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcaca                                                         <  2:365342‑M1/89‑1 (MQ=255)                                                                                                                   aGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTa                                                                                         <  1:460131/92‑1 (MQ=255)                                                                                                                   aGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTa                                                                                         >  2:460131/1‑92 (MQ=255)                                                                                                                    gCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACAACACATTGAAGCAGCGGGTTCACTCTCCAATATGCCGGCACAGGCAATAAATACGCACACACAATCAGc                              >  2:288362/1‑150 (MQ=255)                                                                                                                       tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAAt                                  >  2:174563/1‑143 (MQ=255)                                                                                                                       tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAAt                                  <  1:174563/143‑1 (MQ=255)                                                                                                                       tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGa                           >  1:601232/1‑150 (MQ=255)                                                                                                                             gcCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTccc                     >  2:435515/1‑150 (MQ=255)                                                                                                                              cccTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAg                                                                                        >  2:450539/1‑82 (MQ=255)                                                                                                                              cccTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAg                                                                                        <  1:450539/82‑1 (MQ=255)                                                                                                                                cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAagag                                                                  <  1:14906/102‑1 (MQ=255)                                                                                                                                cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAagag                                                                  >  2:14906/1‑102 (MQ=255)                                                                                                                                cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCTGGCACAg                                                        <  2:28764/112‑1 (MQ=255)                                                                                                                                cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCTGGCACAg                                                        >  1:28764/1‑112 (MQ=255)                                                                                                                                   aaGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCccaacca               >  2:71305/1‑150 (MQ=255)                                                                                                                                      tGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGc            <  2:601232/150‑1 (MQ=255)                                                                                                                                         tGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGAGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGa         <  2:21227/150‑1 (MQ=255)                                                                                                                                             cAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTc                       <  2:460538/132‑1 (MQ=255)                                                                                                                                             cAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTc                       >  1:460538/1‑132 (MQ=255)                                                                                                                                                ccTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGa  <  1:222984/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                CCACCTGATGCTCGACGGTGGCGTGTACCTGGCACCGAGCGCATTCGAAGCGGGCTTCACCTCCATCGCCCATGGCGACAAGGAGCTGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGA  >  NC_002947/5447692‑5447984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.