New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5447841 =	38 (1.630)	3 (0.140)	3/230	NT	7.9%	intergenic (+14/‑231)	hemL/PP_4785	glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein
	?	NC_002947	5447926 =	36 (1.710)					intergenic (+99/‑146)	hemL/PP_4785	glutamate‑1‑semialdehyde 2,1‑aminomutase/hypothetical protein

TGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCTTTGCAGAG  >  NC_002947/5447778‑5448057                                                                                                                                                     |                                                                                                                                    tGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCGAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGca                                                                                                                                    >  1:248062/1‑150 (MQ=255)  gCAGAGCACCCTGACTGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcac                                                                                                                                   <  1:34148/150‑1 (MQ=255)                 ttggttggggaagtcagctgattgtgtgtgcgtatttattgcctgtgCCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcaca                                                                                                                                  <  2:365342‑M1/89‑1 (MQ=255)                 ttggttggggaagtcagctgattgtgtgtgcgtatttattgcctgtgCCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGcaca                                                                                                                                  >  1:365342‑M1/48‑136 (MQ=255)                              gCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACAACACATTGAAGCAGCGGGTTCACTCTCCAATATGCCGGCACAGGCAATAAATACGCACACACAATCAGc                                                                                                       >  2:288362/1‑150 (MQ=255)                                 tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAAt                                                                                                           <  1:174563/143‑1 (MQ=255)                                 tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAAt                                                                                                           >  2:174563/1‑143 (MQ=255)                                 tttGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGa                                                                                                    >  1:601232/1‑150 (MQ=255)                                       gcCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTccc                                                                                              >  2:435515/1‑150 (MQ=255)                                          cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCTGGCACAg                                                                                                                                 <  2:28764/112‑1 (MQ=255)                                          cTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCTGGCACAg                                                                                                                                 >  1:28764/1‑112 (MQ=255)                                             aaGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCccaacca                                                                                        >  2:71305/1‑150 (MQ=255)                                                tGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGc                                                                                     <  2:601232/150‑1 (MQ=255)                                                   tGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGAGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGa                                                                                  <  2:21227/150‑1 (MQ=255)                                                       cAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTc                                                                                                <  2:460538/132‑1 (MQ=255)                                                       cAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTc                                                                                                >  1:460538/1‑132 (MQ=255)                                                          ccTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGa                                                                           <  1:222984/150‑1 (MQ=255)                                                            tgtgccggcctcttcgcgggtgaacccgctcctacaagggggtgtcgctttcttgagtgtaggagtgggttggctcacgaagaggccggCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCccaaccaa                                                                                       >  1:365342‑M2/90‑136 (MQ=255)                                                            tgtgccggcctcttcgcgggtgaacccgctcctacaagggggtgtcgctttcttgagtgtaggagtgggttggctcacgaagaggccggCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCccaaccaa                                                                                       <  2:365342‑M2/47‑1 (MQ=255)                                                                 CGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTATGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGca                                                                                                                   <  2:37230‑M1/103‑1 (MQ=255)                                                                 CGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTATGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGca                                                                                                                   >  1:37230‑M1/1‑103 (MQ=255)                                                                    cctcttcgcgggtgaacccgctcctacaagggggtgtcgctttcttgagtgtaggagtgggttggctcacgaagaggccggCACAGGCAATAAATACTCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACttt                                                                 >  1:234262‑M2/82‑150 (MQ=255)                                                                                ccAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGgcg                                                     >  1:159542/1‑150 (MQ=255)                                                                                   aCCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGa                                                                                                    >  1:468956/1‑100 (MQ=255)                                                                                   aCCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGa                                                                                                    <  2:468956/100‑1 (MQ=255)                                                                                       aCTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTa                                              >  1:262857/1‑150 (MQ=255)                                                                                              cacTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATa                                       <  2:159542/150‑1 (MQ=255)                                                                                               acTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATaa                                      >  1:469953/1‑150 (MQ=255)                                                                                                   aaGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGca                                                                                                                   >  2:298796/1‑69 (MQ=255)                                                                                                   aaGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGca                                                                                                                   <  1:298796/69‑1 (MQ=255)                                                                                                   aaGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAAtgtg                                  <  1:288362/150‑1 (MQ=255)                                                                                                    aGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGc                                 <  2:248062/150‑1 (MQ=255)                                                                                                     gAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGcc                                <  2:262857/150‑1 (MQ=255)                                                                                                            acacCCCCTTGTAGCAGCGTGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCagag                         <  2:264855/150‑1 (MQ=255)                                                                                                              acCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGAc                       >  2:134843/1‑150 (MQ=255)                                                                                                                ccccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTa                                              >  2:133794/1‑125 (MQ=255)                                                                                                                ccccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTa                                              <  1:133794/125‑1 (MQ=255)                                                                                                                 cccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCTCATAAt                                     <  2:18411/133‑1 (MQ=255)                                                                                                                 cccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCTCATAAt                                     >  1:18411/1‑133 (MQ=255)                                                                                                                          gAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGc           >  1:561577/1‑150 (MQ=255)                                                                                                                           aGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGACTAAAACTGTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCt          >  2:175101/1‑150 (MQ=255)                                                                                                                            gCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCtt         <  1:71305/150‑1 (MQ=255)                                                                                                                             cGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCttt        <  1:134843/150‑1 (MQ=255)                                                                                                                                gTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCa             >  2:185181/1‑142 (MQ=255)                                                                                                                                gTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCa             <  1:185181/142‑1 (MQ=255)                                                                                                                                gTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCTTTGCa     >  2:387594/1‑150 (MQ=255)                                                                                                                                   cACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCTTTGCagag  <  1:435515/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                    TGCAGATCACCCTGGATGCGGCTGAGAAAGCCTTTGCTGCCCTGAAGTGATGGCCAGCCTGTACCGGCCTCTTCGTGAGCCAACCCACTCCTACACTCAAGAAAGCGACACCCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAATAAATACGCACACACAATCAGCTGACTTCCCCAACCAAGCAGAAATTCGAGTAAAACTTTGTAAGGTTGGCGCTGCTTATCCCATAATGTGCCACCAGAGACATTGGCCGCAGCTTTGCAGAG  >  NC_002947/5447778‑5448057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.