| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2774112 | 85 (0.910) | 10 (0.120) | 6/228 | NT | 11.5% | intergenic (+20/+90) | calA/PP_5521 | coniferyl alcohol dehydrogenase/hypothetical protein |
| ? | NC_002947 | = 2774173 | 76 (0.890) | intergenic (+81/+29) | calA/PP_5521 | coniferyl alcohol dehydrogenase/hypothetical protein | |||||
TGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2773953‑2774112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgtac‑ggCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACATCACCGGCAATCATCCGCTCA < NC_002947/2774173‑2774026 gGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTGTGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTT < 2:1768364/149‑1TGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTT > 2:2376616/1‑150TGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTT > 2:1661557/1‑150 ACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTAGGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCC > 2:143897/1‑150 TTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTG > 2:1562388/1‑150 TTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTG > 2:557293/1‑150 TGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC > 2:165720/1‑150 CGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GG < 1:557293/150‑1 ATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTGCATCGTT‑‑GCTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCA > 2:1137568/1‑150 GATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCAGGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑G > 1:1731970/1‑112 GATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑G < 2:1731970/112‑1 gtATCAACCTGGCCTGTGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCCTTATCGACATCGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GGCCC‑CACCGGGCGCAAGCCCTACATCCCCCCTGTGTAGGAGCGGGCTc < 2:616967/148‑2 CCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTA < 2:72524/93‑1 CCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTA > 1:72524/1‑93 GCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGCTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGA > 1:2364074/1‑150 TGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTT < 1:603337/77‑1 TGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTT > 2:603337/1‑77 CGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTGCATCGTT‑‑GCTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACA < 1:1137568/150‑1 GGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACA < 1:71022/150‑1 TTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGCTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAAC < 2:2364074/150‑1 TGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GG < 1:2253809/75‑1 TGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GG > 2:2253809/1‑75 CCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGA < 1:165720/150‑1 GTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTACGGGCCT‑CTTCGCGGGCAAGCCCTACATCACCCCTGTGTAGGAGC > 1:521515/1‑112 GTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GGGCCTCTTCGCGGGCAAGCCCTACATCACCCCTGTGTAGGAGC < 2:521515/112‑1 TGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCA < 2:1869388/150‑1 CCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGAT < 1:130684/117‑1 CCTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGAT > 2:130684/1‑117 CTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCCACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACCTCCCCGGCACTCATC > 1:2118361/1‑150 CTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACATCACCGGCAATCATC < 2:112350/150‑1 CTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCC < 2:131459/59‑1 CTGTAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCC > 1:131459/1‑59 TAC‑GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACATCACCGGCAATCATCCGC < 2:138432/150‑1 GGCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACATCACCGGCAATCATCCGCTCA > 2:452213/1‑150 TGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTACCGGTTCGTGATCGACATGGCCACGCTACAGGGCTG‑ATTGATCGGTTGCCTGTAC‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2773953‑2774112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgtac‑ggCCC‑CACCGCGCGCAAGCCCTACATCACCCCTGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCGTACAGGCAACCGATCAATCAGCCCTGTAGCGTGGCCATGTCGATCACGAACCGGTACTTCACATCACCGGCAATCATCCGCTCA < NC_002947/2774173‑2774026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |