| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4018688 = | 78 (0.840) | 7 (0.080) | 5/242 | NT | 8.7% | coding (1079/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4018719 = | 71 (0.790) | coding (1110/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator | |||||
GTGAAGCGGCGGCGATGCTTTCATCGCAGGGGAGATACAGGTTGATGGCCGTACCCTGGCCAAGCGTGCTATCGATGACCAGCTGGCCACCGGATTGCCGCACAAAGCCGTAGACCATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4018840‑4018688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCAGGGTACGGCCATCAACCTGTATCTCCCCTGCGATGAAAGCATCGCC > NC_002947/4018719‑4018830 GTGAAGCGGCGGCGATGCTTTCATCGCAGGGGAGATACAGGTTGATGGCCGTACCCTGGCCAAGCGTGCTATCGATGACCAGCTGGCCACCGGATTGCCGCACAAAGCCGTAGACCATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCG > 1:2446081/1‑150 AGCTGGCCACCGGATTGCCGCACAAAGCCGTAGACCATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCG < 1:324089/70‑1 AGCTGGCCACCGGATTGCCGCACAAAGCCGTAGACCATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCG > 2:324089/1‑70 CATGGACAGCCCAAGGCCAGTGCCCTTGCCGAGCGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCAGGGTACGGCCATCAACCTGTAT < 1:351212/126‑1 CATGGACAGCCCAAGGCCAGTGCCCTTGCCGAGCGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCAGGGTACGGCCATCAACCTGTAT > 2:351212/1‑126 CATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTG < 2:1772466/73‑1 CATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCTGTCCATGGTCTAAGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCAGGGTACGGCCATCAACCTGTATCTCCCCTGCGATGAAAGCATCGCC > 1:66326/1‑150 CATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGAGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTG > 1:1772466/1‑73 TGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCC > 1:2087709/1‑101 TGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCC < 2:2087709/101‑1 GCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCA > 1:1349594/1‑69 GCTGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCA < 2:1349594/69‑1 GTGAAGCGGCGGCGATGCTTTCATCGCAGGGGAGATACAGGTTGATGGCCGTACCCTGGCCAAGCGTGCTATCGATGACCAGCTGGCCACCGGATTGCCGCACAAAGCCGTAGACCATGGACAGCCCAAGGCCAGTGCCCTGGCCGAGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4018840‑4018688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctGTCCATGGTCTACGGCTTTGTGCGGCAATCCGGTGGCCAGCTGGTCATCGATAGCACGCTTGGCCAGGGTACGGCCATCAACCTGTATCTCCCCTGCGATGAAAGCATCGCC > NC_002947/4018719‑4018830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |