| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5816910 = | 24 (0.260) | 23 (0.290) | 14/214 | NT | 52.0% | intergenic (+40/+89) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5816973 = | 22 (0.280) | intergenic (+103/+26) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
GGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817076‑5816910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCC > NC_002947/5816973‑5817113 gtGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTCCGCGCGAGAGCGACGCGC‑‑‑‑‑T < 1:819369/148‑1GGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑T < 2:608409/150‑1 GCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGT < 1:1830364/150‑1 gggGGGGATGCGGACGATGGGGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTCTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG < 2:28524/147‑1 GGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG < 1:811372/150‑1 gGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGA < 1:377914/149‑1 GATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG > 2:725425/1‑144 GATGCTGACGATGGAGGGGGCGTTGCGGAGGATGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG < 1:725425/144‑1 GTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGTGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG > 2:1477480/1‑123 GTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGTGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG < 1:1477480/123‑1 TACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGG > 2:1399941/1‑86 TACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGG < 1:1399941/86‑1 TACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG > 2:1278012/1‑80 TACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGG < 1:1278012/80‑1 GCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCA < 1:1598124/80‑1 GCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCA > 2:1596341/1‑80 GCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCA > 2:1598124/1‑80 GCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCA < 1:1596341/80‑1 TCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCT > 1:9479/1‑150 TCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGC < 1:576820/55‑1 TCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGC > 2:576820/1‑55 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 2:2242922/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCA > 1:2415614/1‑112 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCA < 2:2415614/112‑1 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 2:2023267/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGC > 2:1233837/1‑114 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGC < 1:1233837/114‑1 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTC < 1:960881/111‑1 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTC > 2:960881/1‑111 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCC > 2:1837366/1‑109 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCC < 1:1837366/109‑1 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCG > 1:185553/1‑150 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATC < 1:1653794/143‑1 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATC > 2:1653794/1‑143 ACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCCGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGG < 1:811936/76‑1 ACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCCGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGG > 2:811936/1‑76 TGAGCTGCGCGCGAGAGCGACGCGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCCCCGCCGCC > 2:411903/1‑150 AGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 2:9479/150‑1 AGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 1:2242922/150‑1 tttcGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGC < 2:1930141/118‑1 tttcGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGC > 1:1930141/5‑122 GGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGAGCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATAGTCAGCATCCCCTCCGCCGCCCCGCGCTGCATCACTGAGGACGACTGCGCCAACCGCC < 2:276183/150‑1 GAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCGGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCC > 1:619687/1‑150 GAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCC < 2:578229/150‑1 GGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGC‑‑‑‑‑TACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5817076‑5816910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCC > NC_002947/5816973‑5817113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |