| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6178276 = | 193 (2.070) | 10 (0.110) | 10/242 | NT | 5.5% | coding (858/1545 nt) | atpA | ATP synthase subunit alpha |
| ? | NC_002947 | 6178305 = | 154 (1.700) | coding (829/1545 nt) | atpA | ATP synthase subunit alpha | |||||
CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6178428‑6178276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTG > NC_002947/6178305‑6178453 CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAA < 1:1987253/150‑1CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAA > 1:2169548/1‑150CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAA < 2:58349/150‑1CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAA < 1:813397/150‑1 TTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGAAGGGCGGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAAGCA > 1:1613973/1‑150 GCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAAG < 2:675195/105‑1 GCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAAG > 1:675195/1‑105 CCTGCTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTA > 1:2001485/1‑143 CCTGCTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTA < 2:2001485/143‑1 TGCTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAG > 1:27077/1‑150 TGCTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAG < 2:27077/150‑1 CTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATC > 1:1840533/1‑76 CTGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATC < 2:1840533/76‑1 TGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGT < 1:1749634/126‑1 TGCTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGT > 2:1749634/1‑126 CTGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGNCGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATT > 1:2337473/1‑150 TGCGCCGTCCACCAGGACGCGAAGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTG > 1:760054/1‑150 ggcgGCAGCACGGAGCTCTGACGGTAGGCGACGGCCCTCCGGGTCAGGTCATCGTAAACGATCAGTGCGTCTTCACCTCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAA < 2:1202950/146‑1 AGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCA > 1:937056/1‑150 AGCAGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCA > 1:930682/1‑150 AGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCTTCGGAATCCGCCGCACTG < 2:642963/150‑1 AGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTG < 2:1984565/150‑1 CAATTCCTGGCGCCATACGCCGGTTGCACCATGGGCGAGTTCTTCCGCGACCGCGGTGAAGACGCACTGATCGTTTACGATGACCTGTCCAAGCAGGCCGTTGCCTACCGTCAGATCTCCCTGCTGCTGCGCCGTCCACCAGGACGCGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6178428‑6178276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaGCAGGGAGATCTGACGGTAGGCAACGGCCTGCTTGGACAGGTCATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTG > NC_002947/6178305‑6178453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |