| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3951141 | 23 (0.250) | 4 (0.060) | 4/194 | NT | 14.6% | intergenic (‑61/+134) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| ? | NC_002947 | = 3951201 | 29 (0.400) | intergenic (‑121/+74) | PP_3486/PP_3487 | cytochrome c/hypothetical protein | |||||
CTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGC > NC_002947/3950992‑3951290 | cTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGG > 1:986856‑M1/1‑150 (MQ=255) tACTGGCGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCAAGGGCTGAGGTCGATGTTGCCATGCCAAGAACG‑‑CAGGAAAGCCATATCGCATTTCCTGTGGGAGCGGCCTTGCGTCGCGAAAggg < 1:1993853/150‑1 (MQ=255) tACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAggg > 1:2315061/1‑150 (MQ=255) aCTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATACCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGc < 2:2305691/150‑1 (MQ=255) aaGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTg < 2:1149627/150‑1 (MQ=255) aGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTgg > 1:104674/1‑150 (MQ=255) aGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTgg > 2:492616/1‑150 (MQ=255) ggCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGcccc < 2:2334567/141‑1 (MQ=255) ggCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGcccc > 1:2334567/1‑141 (MQ=255) ggCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGATAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGc > 2:2310992/1‑150 (MQ=255) cTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAgc < 1:262930/150‑1 (MQ=255) tGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGACGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAgcg < 1:263771/150‑1 (MQ=255) ttGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGGCGCAGccctttc < 2:2435213/131‑5 (MQ=255) gTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCa > 1:1525485/1‑147 (MQ=255) gTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCa < 2:1525485/147‑1 (MQ=255) gTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAagag > 1:1194061/1‑150 (MQ=255) ggtcAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAgc < 2:2315061/150‑1 (MQ=255) tcAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgc > 1:1314293‑M1/1‑98 (MQ=255) ggTGCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGAAGCTCAAGCGCAGAAAGAGGGGAGCGCTgc < 2:2113622/150‑1 (MQ=255) ccagggccagggCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTgcgcg < 1:903697/150‑1 (MQ=255) gCCAGGGCTGAGGTCGAAGTTGCCATGCCCAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCCCGAAAGGGCTGCGCAGCAGCCCCGGCCGGGGCCGCTCAAGCGCAGAAAGAGGCGAGCGCCGCGCGCTccc < 2:1064139‑M2/150‑4 (MQ=255) ccAGGGCTCAGGCCGAAGTTGCCATGCCAAGCAAGTTCAG‑‑AAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTactt > 1:123288‑M2/1‑146 (MQ=255) aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc > 2:104674‑M2/1‑144 (MQ=255) aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc > 2:986856‑M2/1‑144 (MQ=255) cTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcga > 1:492616‑M2/1‑140 (MQ=255) tGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgac < 2:1314293‑M1/150‑72 (MQ=255) tGAGGTCGAAGTTGCAATGCCAAGTACG‑‑AAGGTAAGACATATAGTAAGCCTTTTGGGAGCGTCCTGTCGTCGCGAAAGCGCTGCGCCGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgac > 2:1330662‑M2/1‑139 (MQ=255) gcgAAGTCGCCATGCCAAGCACG‑‑CAGGTAAGCCATAGCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCGGCGCAGCAGCCCCGGCAGTGGCAGCGCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaag > 1:1064139‑M2/2‑134 (MQ=255) cGAAGTTGCCATGCCAAGCACG‑‑CAGATAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaagg > 1:2310992‑M2/1‑133 (MQ=255) aaGTTGCCATGCCAAGCTCG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggcc > 1:707409‑M2/1‑131 (MQ=255) aaGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagcc > 1:2199903‑M1/1‑58 (MQ=255) aaGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagcc < 2:2199903‑M1/119‑62 (MQ=255) g‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATg > 1:1812161/1‑150 (MQ=255) gAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCa < 2:1812161/150‑1 (MQ=255) cGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGt > 2:501606/1‑42 (MQ=255) cGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGt < 1:501606/42‑1 (MQ=255) ggCCTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgcttcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgagcttggcatggcaactt > 1:707409‑M1/1‑19 (MQ=255) gCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATa > 2:1788117/1‑150 (MQ=255) gCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATa > 2:2244369/1‑150 (MQ=255) ccTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttatctgcgtgcttggcatggcaacttcg > 1:2310992‑M1/1‑17 (MQ=255) ccTNGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATAc > 2:1513317/1‑150 (MQ=255) cTTGCGTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgcgctgccactgccggggctgctgcgccgccctttcgcgacgcaaggccgctcccacagggcttgcgctatggcttacctgcgtgcttggcatggcgacttcgc > 1:1064139‑M1/1‑16 (MQ=255) ttGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTGTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTc > 1:156407/1‑150 (MQ=255) gTCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgcggcgcagcgctttcgcgacgacaggacgctcccaaaaggcttactatatgtcttaccttcgtacttggcattgcaacttcgacctca > 2:1330662‑M1/1‑11 (MQ=255) gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctca < 2:1314293‑M2/150‑80 (MQ=255) tCGCGAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcag > 1:492616‑M1/1‑10 (MQ=255) gAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct > 2:104674‑M1/1‑6 (MQ=255) gAAAGGagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccct > 2:986856‑M1/1‑6 (MQ=255) aaGTagcgcgcagcgctcccctctttctgcgcttgagctgccactgccggggctgctgcgcagccctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttctgaacttgcttggcatggcaacttcggcctgagccctgg > 1:123288‑M1/1‑4 (MQ=255) gggagcgcgcggcgctcgcctctttctgcgcttgagcggccccggccggggctgctgcgcagccctttcgggacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgctgggcatggcaacttcgacctcagccctggc < 2:1064139‑M1/149‑148 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgctt < 2:2199903‑M2/119‑59 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgctt > 1:2199903‑M2/1‑61 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAACGTGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGc > 1:627312/1‑150 (MQ=255) | CTACTGGAGACGCCCTCGCGGTAAAGGCGTTTGCCTGCTTGTTCGTGGTCGGTCAGGTCCAGGGCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGC > NC_002947/3950992‑3951290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |