New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3951141 | 23 (0.250) | 4 (0.060) | 4/194 | NT | 14.6% | intergenic (‑61/+134) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
? | NC_002947 | = 3951201 | 29 (0.400) | intergenic (‑121/+74) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
GCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCG > NC_002947/3951055‑3951346 | gCCAGGGCTGAGGTCGAAGTTGCCATGCCCAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCCCGAAAGGGCTGCGCAGCAGCCCCGGCCGGGGCCGCTCAAGCGCAGAAAGAGGCGAGCGCCGCGCGCTccc < 2:1064139‑M2/150‑4 (MQ=255) ccAGGGCTCAGGCCGAAGTTGCCATGCCAAGCAAGTTCAG‑‑AAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTactt > 1:123288‑M2/1‑146 (MQ=255) aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc > 2:986856‑M2/1‑144 (MQ=255) aGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttc > 2:104674‑M2/1‑144 (MQ=255) cTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcga > 1:492616‑M2/1‑140 (MQ=255) tGAGGTCGAAGTTGCAATGCCAAGTACG‑‑AAGGTAAGACATATAGTAAGCCTTTTGGGAGCGTCCTGTCGTCGCGAAAGCGCTGCGCCGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgac > 2:1330662‑M2/1‑139 (MQ=255) gcgAAGTCGCCATGCCAAGCACG‑‑CAGGTAAGCCATAGCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCGGCGCAGCAGCCCCGGCAGTGGCAGCGCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaag > 1:1064139‑M2/2‑134 (MQ=255) cGAAGTTGCCATGCCAAGCACG‑‑CAGATAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaagg > 1:2310992‑M2/1‑133 (MQ=255) aaGTTGCCATGCCAAGCTCG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggcc > 1:707409‑M2/1‑131 (MQ=255) g‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATg > 1:1812161/1‑150 (MQ=255) gAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCa < 2:1812161/150‑1 (MQ=255) gCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATa > 2:1788117/1‑150 (MQ=255) gCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATa > 2:2244369/1‑150 (MQ=255) ccTNGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATAc > 2:1513317/1‑150 (MQ=255) ttGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTGTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTc > 1:156407/1‑150 (MQ=255) gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctca < 2:1314293‑M2/150‑80 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgctt < 2:2199903‑M2/119‑59 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgctt > 1:2199903‑M2/1‑61 (MQ=255) ggCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAACGTGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGc > 1:627312/1‑150 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACACAAGCGG‑‑ATACCACCAACCACACTCCCCTAGGCGGCCCATTAGACTCACCGACCGGCCCGCGGc > 2:23989/1‑150 (MQ=255) cagcagCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTggg > 2:2166724/1‑150 (MQ=255) agcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGTTGCGCGCt < 2:2051880/53‑1 (MQ=255) agcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCt > 1:2051880/1‑53 (MQ=255) gcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTcctttcgcgacgcaaggccgctcccacagggcttgcgatatggcttacctgcgtgcttggcatggcaacttcgacctcagccctggccctggacctga > 1:1314293‑M2/1‑52 (MQ=255) gcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTc > 2:2165461/1‑150 (MQ=255) ccccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACa > 2:808648/1‑150 (MQ=255) ccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCCGCGGCTGGGTCAACAGc > 1:997226/1‑150 (MQ=255) ccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGc > 1:2117687/1‑150 (MQ=255) cGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCt < 1:808648/150‑1 (MQ=255) cAGCTCAAGCGCAGAAAGAGGGGAGCACTGCGCGCTCCTTGCGCGACGCATGGCCGCTCACACAAAAGCGGACAAGCCACTTACTGGCATT‑‑TCATTCCGCCTATGATACTCACCGACCGGCCAGCGGCTGGGTCAACACCTGCATGCGCt > 1:2388063/1‑150 (MQ=255) tCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑a > 1:428358/1‑68 (MQ=255) tCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑a < 2:428358/68‑1 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCa > 2:136921/1‑100 (MQ=255) aGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCa < 1:136921/100‑1 (MQ=255) gAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCa < 2:149269/81‑1 (MQ=255) gAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCa > 1:149269/1‑81 (MQ=255) gAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGGCAACAGCTGCATGCGCTGGGCAATcgccgc > 1:1877679/1‑150 (MQ=255) agagGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGc < 2:1197991/127‑1 (MQ=255) agagGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGc > 1:1197991/1‑127 (MQ=255) gggAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCacc < 2:309702/94‑1 (MQ=255) gggAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCacc > 1:309702/1‑94 (MQ=255) tGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTgg < 2:1572152/124‑1 (MQ=255) tGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTgg > 1:1572152/1‑124 (MQ=255) gcgcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCggg < 1:1513317/150‑1 (MQ=255) ccgatcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCTGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCCATCTCCGCTGGCGGTGCATCCggg < 1:1035068/145‑1 (MQ=255) gcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCg > 2:2296800/1‑150 (MQ=255) | GCCAGGGCTGAGGTCGAAGTTGCCATGCCAAGCACG‑‑CAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGG‑‑ATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCG > NC_002947/3951055‑3951346 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |