mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 1,844,516 | Δ70 bp | coding (251‑320/2754 nt) | gacS ← | sensor protein GacS |
| RA | 1,852,004 | C→T | R350C (CGT→TGT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,273 | +C | intergenic (+464/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,275 | A→G | intergenic (+466/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,277 | C→T | intergenic (+468/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,280 | C→T | intergenic (+471/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,299 | C→T | intergenic (+490/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,301 | A→C | intergenic (+492/+260) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,304 | 2 bp→GC | intergenic (+495/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 5,610,767 | T→C | F44S (TTC→TCC) | emrE → | small multidrug resistance protein |
| JC | 6,079,809 | (TGTCGCCGGCGGCCG)1→2 | coding (167/399 nt) | PP_5331 → | acyl‑CoA thioesterase |
| MC JC | 6,098,326 | (CAAGCTGCG)2→1 | coding (811‑819/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 55316 | 226 (0.990) | 223 (0.980) | 127/290 | 0.2 | 49.7% | coding (298/324 nt) | PP_0048 | hypothetical protein |
| ? | NC_002947 | = 3971692 | NA (NA) | intergenic (+31/‑349) | PP_3501/PP_3502 | transposase/transposase | |||||
| * | ? | NC_002947 | 5033193 = | NA (NA) | 212 (0.930) | 125/290 | 0.2 | 47.0% | intergenic (+310/‑100) | PP_4435/PP_4437 | hypothetical protein/transposase |
| ? | NC_002947 | 6144572 = | 239 (1.050) | intergenic (‑52/‑42) | PP_5734/PP_5735 | hypothetical protein/hypothetical protein | |||||