New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1197531 =	36 (0.830)	4 (0.090)	4/250	NT	9.9%	coding (1586/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	1197561 =	37 (0.870)					coding (1616/1755 nt)	xcpQ	type II secretion pathway protein XcpQ

CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1197570‑1197531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG  >  NC_002947/1197561‑1197665                                                                                                                                                   CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG  <  1:1119129/145‑1 CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG  >  2:1119129/1‑145        GGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGC                                            >  1:154487/1‑96        GGCTCGGCCCGTCGCGCAGGATACGCGGGCGGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGC                                            <  2:154487/96‑1                                                                                                                                                   CCCGCCAGGCTCGGCCCGTCGCGCAGGATACGCGGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1197570‑1197531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCG  >  NC_002947/1197561‑1197665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.