New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1197531 =	36 (0.830)	4 (0.090)	4/250	NT	9.9%	coding (1586/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	1197561 =	37 (0.870)					coding (1616/1755 nt)	xcpQ	type II secretion pathway protein XcpQ

AGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCGGTGACTGGTGATGCTGCC  >  NC_002947/1197420‑1197707                                                                                                                                              |                                                                                                                                                   aGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCgg                                                                                                                                            <  2:1050257/150‑1 (MQ=255) aGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCgg                                                                                                                                            <  1:310052/150‑1 (MQ=255)    tGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGcc                                                                                                                                         <  1:941723/150‑1 (MQ=255)       gTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATACCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCa                                                                                                                                      <  1:347849/150‑1 (MQ=255)       cggggaatacctgcagcagccgcgtgccctctgcaaggtccggcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCggg                                                                                                                                           <  1:1119129‑M1/40‑1 (MQ=255)       cggggaatacctgcagcagccgcgtgccctctgcaaggtccggcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCggg                                                                                                                                           >  2:1119129‑M1/106‑145 (MQ=255)        tACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGCCGGGCGGCGTCTGGCGGccccagg                                                                                                                                     >  2:1086167/1‑146 (MQ=255)         cccagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGt                                                                                                                                    <  1:1086167/149‑1 (MQ=255)           cagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGa                                                                                                                                  >  1:845543/1‑150 (MQ=255)           cagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGa                                                                                                                                  >  1:845460/1‑150 (MQ=255)            agcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGaa                                                                                                                                 >  2:44103/1‑150 (MQ=255)               gaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGAc                                                                                                                              >  1:828042/1‑150 (MQ=255)                  cagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAg                                                                                                                           >  2:66742/1‑150 (MQ=255)                    gcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTa                                                                                                                         <  2:828042/150‑1 (MQ=255)                                     gCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGa                                                                                                        <  1:648890/150‑1 (MQ=255)                                          aTTCATTATATTGGCCGGTTGTTCCGCTCCGATGCCACCCACAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACcaca                                                                                                   >  2:447565/1‑150 (MQ=255)                                           ttCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCacac                                                                                                  <  2:845543/150‑1 (MQ=255)                                           ttCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATAGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCacac                                                                                                  <  2:845460/150‑1 (MQ=255)                                               ttgcttcggCCGTTTGTGCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                                                                              >  2:275470/8‑150 (MQ=255)                                               ttATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                                                                              >  1:218733/1‑150 (MQ=255)                                               ttATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                                                                              >  2:133761/1‑150 (MQ=255)                                                 gcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGcc                                                                                                                                                  <  2:154487‑M1/33‑1 (MQ=255)                                                 gcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGcc                                                                                                                                                  >  1:154487‑M1/64‑96 (MQ=255)                                                   cTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAg                                                                                          >  2:272545/1‑150 (MQ=255)                                                     tGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCCGACGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGtt                                                                                        >  2:431311/1‑150 (MQ=255)                                                       gCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGc                                                                                      >  1:237812/1‑150 (MQ=255)                                                               ttCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCt                                                                                                                                        <  2:156343/92‑1 (MQ=255)                                                               ttCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCt                                                                                                                                        >  1:156343/1‑92 (MQ=255)                                                                                  gCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGgctgc                                                           <  1:66742/150‑1 (MQ=255)                                                                                  gCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGgctgc                                                           >  2:373933/1‑150 (MQ=255)                                                                                      tACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCa                                                       <  1:819347/150‑1 (MQ=255)                                                                                       aCCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAg                                                      <  2:218733/150‑1 (MQ=255)                                                                                       aCCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAg                                                      <  1:373933/150‑1 (MQ=255)                                                                                         cAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGCCCTTGCAGAGGGCACGCGGCTGCTGCAGGt                                                    >  1:1278/1‑150 (MQ=255)                                                                                         cAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGt                                                    >  1:482702/1‑150 (MQ=255)                                                                                                      cccgccaggctcggcccgtcgcgcaggatacgcgggcggaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCg                                            >  2:1119129‑M2/41‑145 (MQ=255)                                                                                                      cccgccaggctcggcccgtcgcgcaggatacgcgggcggaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCg                                            <  1:1119129‑M2/105‑1 (MQ=255)                                                                                                             ggctcggcccgtcgcgcaggatacgcgggcggaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGc                                                                                      >  1:154487‑M2/34‑96 (MQ=255)                                                                                                             ggctcggcccgtcgcgcaggatacgcgggcggaGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGc                                                                                      <  2:154487‑M2/63‑1 (MQ=255)                                                                                                                  cgcccggGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTg                           >  2:16079/1‑150 (MQ=255)                                                                                                                     ccgcGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGaa                        <  2:780505/150‑1 (MQ=255)                                                                                                                         gTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCg                    <  1:447565/150‑1 (MQ=255)                                                                                                                         gTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCg                    >  1:722345/1‑150 (MQ=255)                                                                                                                           aTCCTGCGCGACGGGCCGAGCCGGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCCGGAAGGCGGt                  <  1:997466/150‑1 (MQ=255)                                                                                                                                   cgACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCGGTGACTGGTg          <  2:722345/150‑1 (MQ=255)                                                                                                                                          ccGAGCCTGGCGGGCCTCAGTGAAGACAAGGACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCGGTGACTGGTGAtgctgc   <  1:16079/150‑1 (MQ=255)                                                                                                                                           cGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCATGGAAGGCGGTGACTGGTGATGCTGcc  <  1:275470/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   AGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGTATTCCCCGCCAGCCGCGCACGCCTGGAAGGCGGTGACTGGTGATGCTGCC  >  NC_002947/1197420‑1197707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.