New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1197531 =	36 (0.830)	4 (0.090)	4/250	NT	9.9%	coding (1586/1755 nt)	xcpQ	type II secretion pathway protein XcpQ
	?	NC_002947	1197561 =	37 (0.870)					coding (1616/1755 nt)	xcpQ	type II secretion pathway protein XcpQ

CAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGT  >  NC_002947/1197382‑1197657                                                                                                                                                      |                                                                                                                               cAACGGCCTGGTGATACTTGGCGGGCTGGTCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCAt                                                                                                                                <  1:159972/150‑1 (MQ=255)  aaCGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATc                                                                                                                               >  1:780505/1‑150 (MQ=255)     ggCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATccgc                                                                                                                            <  2:361609/150‑1 (MQ=255)       ccTGGTGATACTTGGCGGGCTGATCAGCGACGCGCTCCGTACCAGCGATCGTCGGTTGCCACTGCTCGGCGAAGTTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATccgccc                                                                                                                          <  1:247843/150‑1 (MQ=255)           gTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGt                                                                                                                      >  1:1072487/1‑150 (MQ=255)                 cTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTg                                                                                                                >  2:743951/1‑150 (MQ=255)                         gCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACgg                                                                                                        <  1:743951/150‑1 (MQ=255)                           tGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGc                                                                                                      >  2:997466/1‑150 (MQ=255)                                       aGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCgg                                                                                          <  1:310052/150‑1 (MQ=255)                                       aGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCgg                                                                                          <  2:1050257/150‑1 (MQ=255)                                          tGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGcc                                                                                       <  1:941723/150‑1 (MQ=255)                                             gTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATACCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCa                                                                                    <  1:347849/150‑1 (MQ=255)                                             cggggaatacctgcagcagccgcgtgccctctgcaaggtccggcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCggg                                                                                         <  1:1119129‑M1/40‑1 (MQ=255)                                             cggggaatacctgcagcagccgcgtgccctctgcaaggtccggcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCggg                                                                                         >  2:1119129‑M1/106‑145 (MQ=255)                                              tACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGCCGGGCGGCGTCTGGCGGccccagg                                                                                   >  2:1086167/1‑146 (MQ=255)                                               cccagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGt                                                                                  <  1:1086167/149‑1 (MQ=255)                                                 cagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGa                                                                                >  1:845460/1‑150 (MQ=255)                                                 cagcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGa                                                                                >  1:845543/1‑150 (MQ=255)                                                  agcgaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGaa                                                                               >  2:44103/1‑150 (MQ=255)                                                     gaccagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGAc                                                                            >  1:828042/1‑150 (MQ=255)                                                        cagcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAg                                                                         >  2:66742/1‑150 (MQ=255)                                                          gcgTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTa                                                                       <  2:828042/150‑1 (MQ=255)                                                                           gCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGa                                                      <  1:648890/150‑1 (MQ=255)                                                                                aTTCATTATATTGGCCGGTTGTTCCGCTCCGATGCCACCCACAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACcaca                                                 >  2:447565/1‑150 (MQ=255)                                                                                 ttCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCacac                                                <  2:845543/150‑1 (MQ=255)                                                                                 ttCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATAGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCacac                                                <  2:845460/150‑1 (MQ=255)                                                                                     ttgcttcggCCGTTTGTGCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                            >  2:275470/8‑150 (MQ=255)                                                                                     ttATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                            >  1:218733/1‑150 (MQ=255)                                                                                     ttATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCt                                            >  2:133761/1‑150 (MQ=255)                                                                                       gcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGcc                                                                                                <  2:154487‑M1/33‑1 (MQ=255)                                                                                       gcaactgcagcggtgtggtctgctgcaaggtgcggtacttgtcttcactgaggcccgccaggcTCCGCCCGCGTATCCTGCGCGACGGGCCGAGcc                                                                                                >  1:154487‑M1/64‑96 (MQ=255)                                                                                         cTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAg                                        >  2:272545/1‑150 (MQ=255)                                                                                           tGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCCGACGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGtt                                      >  2:431311/1‑150 (MQ=255)                                                                                             gCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGc                                    >  1:237812/1‑150 (MQ=255)                                                                                                     ttCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCt                                                                                      >  1:156343/1‑92 (MQ=255)                                                                                                     ttCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCt                                                                                      <  2:156343/92‑1 (MQ=255)                                                                                                                        gCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGgctgc         >  2:373933/1‑150 (MQ=255)                                                                                                                        gCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGgctgc         <  1:66742/150‑1 (MQ=255)                                                                                                                            tACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCa     <  1:819347/150‑1 (MQ=255)                                                                                                                             aCCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAg    <  2:218733/150‑1 (MQ=255)                                                                                                                             aCCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAg    <  1:373933/150‑1 (MQ=255)                                                                                                                               cAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGCCCTTGCAGAGGGCACGCGGCTGCTGCAGGt  >  1:1278/1‑150 (MQ=255)                                                                                                                               cAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGt  >  1:482702/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                               CAACGGCCTGGTGATACTTGGCGGGCTGATCAGCGACGAGTTGAGTACCAGCGACCAGCGTGTGCCACTGCTCGGCGACATTCCTTATCTTGGCCGGTTGTTCCGCTCCGATGCCACCCGCAATACCAAGCAGAACCTGATGGTGTTCATCCGCCCGCGTATCCTGCGCGACGGGCCGAGCCTGGCGGGCCTCAGTGAAGACAAGTACCGCACCTTGCAGCAGACCACACCGCTGCAGTTGCCGGACCTTGCAGAGGGCACGCGGCTGCTGCAGGT  >  NC_002947/1197382‑1197657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.