New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1229855 | 25 (0.580) | 4 (0.100) | 4/244 | NT | 14.3% | coding (3029/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein |
? | NC_002947 | = 1229862 | 24 (0.580) | coding (3036/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein |
AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1229810‑1229855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatATGTTCA‑ATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC < NC_002947/1229862‑1229757 AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCA‑ATGCCGTGAG > 1:237871/1‑63 AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCA‑ATGCCGTGAG < 2:237871/63‑1 ATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC < 1:572431/134‑1 ATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC > 2:572431/1‑134 AACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1229810‑1229855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatATGTTCA‑ATGCCGTGAGGGATCGCAGTCAGGCGATTGCCGGACAGGTCGAGTTCAATCAGGTTGGGAAAACGGCGAAGAAAGTCCGCATTGATTTCACCAAGGCCC < NC_002947/1229862‑1229757 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |