New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1229855	25 (0.580)	4 (0.100)	4/244	NT	14.3%	coding (3029/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	= 1229862	24 (0.580)					coding (3036/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein

CATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGGTACTGACGCGCCTGGG  >  NC_002947/1229728‑1230011                                                                                                                                        |                                                                                                                                                      cATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCgg                                                                                                                                        <  2:895720/150‑1 (MQ=255)        gACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGa                                                                                                                                 >  2:667174/1‑150 (MQ=255)                          aTCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCg                                                                                                               <  2:287463/150‑1 (MQ=255)                           tCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGc                                                                                                                                       >  2:710466/1‑125 (MQ=255)                           tCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGc                                                                                                                                       <  1:710466/125‑1 (MQ=255)                            cTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTg                                                                                                             >  1:794633/1‑150 (MQ=255)                              gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCAtgccgtgagggatcgcagtcaggcgat                                                                                                                             >  2:572431‑M2/1‑107 (MQ=255)                              gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCAtgccgtgagggatcgcagtcaggcgat                                                                                                                             <  1:572431‑M2/134‑28 (MQ=255)                              gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGAt                                                                                                           >  1:1066021/1‑150 (MQ=255)                                gCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATaa                                                                                                         <  1:156640/150‑1 (MQ=255)                                   ttGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACat                                                                                                                                                       >  2:379105/1‑101 (MQ=255)                                   ttGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACat                                                                                                                                                       <  1:379105/101‑1 (MQ=255)                                        gAAATCAATGCGGACTTTCTTCGCCGTTGTCCCAACCTGCTTGAACTCGACCTGTCCGCCAATGGCCTGACTGCGACCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAg                                                                                                 >  2:38836/1‑150 (MQ=255)                                                             cgccgcTTTCCCAACCTTAATTAACTCTATCTTTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGcc                                                                            <  2:794633/150‑1 (MQ=255)                                                               ccGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGATGAACCTGCGCCGTAACAGCGTGATaa                                                                                                         >  1:1024793/1‑119 (MQ=255)                                                               ccGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGATGAACCTGCGCCGTAACAGCGTGATaa                                                                                                         <  2:1024793/119‑1 (MQ=255)                                                                      cccAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGt                                                                   <  1:667174/150‑1 (MQ=255)                                                                            cTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACAGATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTGTTGCCGGGATGAGTGCGCTg                                                             >  2:133168/1‑150 (MQ=255)                                                                                         aCCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGAcc                                                >  1:373567/1‑150 (MQ=255)                                                                                            tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGt                                                                                           <  1:32805/104‑1 (MQ=255)                                                                                            tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGt                                                                                           >  2:32805/1‑104 (MQ=255)                                                                                            tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCa                                             >  1:1118332/1‑150 (MQ=255)                                                                                              tCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGc                                           <  1:1075727/150‑1 (MQ=255)                                                                                                cGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCca                                         >  1:650483/1‑150 (MQ=255)                                                                                                   cAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACaa                                      <  2:141837/150‑1 (MQ=255)                                                                                                                   aTCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGgcg                      >  1:119334/1‑150 (MQ=255)                                                                                                                       cTCACGGCAT‑TGAACATatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagtt                                                                                                         <  2:237871‑M2/63‑47 (MQ=255)                                                                                                                       cTCACGGCAT‑TGAACATatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagtt                                                                                                         >  1:237871‑M2/1‑17 (MQ=255)                                                                                                                       cTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCgg                  <  1:1033212/150‑1 (MQ=255)                                                                                                                                   gAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGGTACTGACgcgc       <  2:1066021/150‑1 (MQ=255)                                                                                                                                     aCATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTCCCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGGTACTGACGCGCCt     <  1:303687/150‑1 (MQ=255)                                                                                                                                        tatGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGGTACTGACGCGCCTggg  >  1:736374/1‑150 (MQ=255)                                                                                                                                        |                                                                                                                                                      CATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGGTACTGACGCGCCTGGG  >  NC_002947/1229728‑1230011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.