| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1229855 | 25 (0.580) | 4 (0.100) | 4/244 | NT | 14.3% | coding (3029/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | = 1229862 | 24 (0.580) | coding (3036/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein | |||||
GGAGGGGGTGAGCTTTGATCATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGG > NC_002947/1229709‑1229995 | ggAGGGGGTGAGCTTTGATCATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGa < 2:1085288/150‑1 (MQ=255) cATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCgg < 2:895720/150‑1 (MQ=255) gACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGa > 2:667174/1‑150 (MQ=255) aTCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCg < 2:287463/150‑1 (MQ=255) tCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGc > 2:710466/1‑125 (MQ=255) tCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGc < 1:710466/125‑1 (MQ=255) cTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTg > 1:794633/1‑150 (MQ=255) gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCAtgccgtgagggatcgcagtcaggcgat > 2:572431‑M2/1‑107 (MQ=255) gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATATGTTCAtgccgtgagggatcgcagtcaggcgat < 1:572431‑M2/134‑28 (MQ=255) gggCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGAt > 1:1066021/1‑150 (MQ=255) gCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATaa < 1:156640/150‑1 (MQ=255) ttGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACat < 1:379105/101‑1 (MQ=255) ttGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACat > 2:379105/1‑101 (MQ=255) gAAATCAATGCGGACTTTCTTCGCCGTTGTCCCAACCTGCTTGAACTCGACCTGTCCGCCAATGGCCTGACTGCGACCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAg > 2:38836/1‑150 (MQ=255) cgccgcTTTCCCAACCTTAATTAACTCTATCTTTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGcc < 2:794633/150‑1 (MQ=255) ccGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGATGAACCTGCGCCGTAACAGCGTGATaa > 1:1024793/1‑119 (MQ=255) ccGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGATGAACCTGCGCCGTAACAGCGTGATaa < 2:1024793/119‑1 (MQ=255) cccAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGt < 1:667174/150‑1 (MQ=255) cTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACAGATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTGTTGCCGGGATGAGTGCGCTg > 2:133168/1‑150 (MQ=255) aaCTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATatgttcaatgccgtgag > 1:237871‑M1/1‑46 (MQ=255) aaCTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCATatgttcaatgccgtgag < 2:237871‑M1/63‑18 (MQ=255) aCCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGAcc > 1:373567/1‑150 (MQ=255) tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGt > 2:32805/1‑104 (MQ=255) tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGt < 1:32805/104‑1 (MQ=255) tGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCa > 1:1118332/1‑150 (MQ=255) tCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGc < 1:1075727/150‑1 (MQ=255) cGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCca > 1:650483/1‑150 (MQ=255) cAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACaa < 2:141837/150‑1 (MQ=255) aTCGCCTGACTGCGATCCCTCACGGCATtgaacatatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagttcaatcaggttgggaaaacggcgaagaaagtccgcattgatttcaccaaggccc < 1:572431‑M1/134‑107 (MQ=255) aTCGCCTGACTGCGATCCCTCACGGCATtgaacatatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagttcaatcaggttgggaaaacggcgaagaaagtccgcattgatttcaccaaggccc > 2:572431‑M1/1‑28 (MQ=255) aTCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGgcg > 1:119334/1‑150 (MQ=255) cTCACGGCAT‑TGAACATatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagtt > 1:237871‑M2/1‑17 (MQ=255) cTCACGGCAT‑TGAACATatgccgtgagggatcgcagtcaggcgattgccggacaggtcgagtt < 2:237871‑M2/63‑47 (MQ=255) cTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCgg < 1:1033212/150‑1 (MQ=255) | GGAGGGGGTGAGCTTTGATCATGTGCGACGGCTGATCCTCAGTGATCTGGGCCTTGGTGAAATCAATGCGGACTTTCTTCGCCGTTTTCCCAACCTGATTGAACTCGACCTGTCCGGCAATCGCCTGACTGCGATCCCTCACGGCAT‑TGAACATATGCCCCGCCTGCGGCAGCTGAACCTGCGCCGTAACAGCGTGATAATGGATGAGGCCGGTGAATTGCGTCTTGCCGGGATGAGTGCGCTGCGGTACCTGGACCTCAGCCACAACCCGTTGGGAAGGGCGCCGG > NC_002947/1229709‑1229995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |