New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2588895	37 (0.850)	4 (0.100)	4/244	NT	10.5%	coding (2217/2559 nt)	PP_2266	DNA‑directed RNA polymerase
	?	NC_002947	= 2588913	33 (0.790)					coding (2235/2559 nt)	PP_2266	DNA‑directed RNA polymerase

GCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2588746‑2588895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgCGACTGCTTGCGCTTGTCCAGGGCGTCTTGCTCTTCGTTCATCAGGAGGCGCACACGGGCCCCGTTGATGGCCGTTTTGACGCGGCGAGCTACCACGGAGTTGTACGCCTGCATCACCGGGAAGCCCACGGCAGTGGTCCAGCACACC  <  NC_002947/2588913‑2588766                                                                                                                                                                                                                                                                                                            GCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTG                                                                                                                                                      <  1:962071/150‑1                                                                                 TCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGCGACTGCTTGCGCTTGTCCAGG                                                                                                                                <  1:963677/92‑1                                                                                 TCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGCGACTGCTTGCGCTTGTCCAGG                                                                                                                                >  2:963677/1‑92                                                                                                     TCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGCGACTGCTTGCGCTTGTCCAGGGCGTCTTG                                                                                                                        >  1:1005721/1‑80                                                                                                     TCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGCGACTGCTTGCGCTTGTCCAGGGCGTCTTG                                                                                                                        <  2:1005721/80‑1                                                                                                                                                    CTGCGACTGCTTGCGCTTGTCCAGGGCGTCTTGCTCTTCGTTCATCAGGAGGCGCACACGGGCC                                                                                         <  1:805195/64‑1                                                                                                                                                    CTGCGACTGCTTGCGCTTGTCCAGGGCGTCTTGCTCTTCGTTCATCAGGAGGCGCACACGGGCC                                                                                         >  2:805195/1‑64                                                                                                                                                     TGCGACTGCTTGCGCTTGTCCAGGGCGTCTTGCTCTTCGTTCATCAGGAGGCGCACACGGGCCCCGTTGATGGCCGTTTTGACGCGGCGAGCTACCACGGAGTTGTACGCCTGCATCACCGGGAAGCCCACGGCAGTGGTCCAGCACACC  <  2:672397/150‑1                                                                                                                                                                                                                                                                                                            GCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2588746‑2588895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgCGACTGCTTGCGCTTGTCCAGGGCGTCTTGCTCTTCGTTCATCAGGAGGCGCACACGGGCCCCGTTGATGGCCGTTTTGACGCGGCGAGCTACCACGGAGTTGTACGCCTGCATCACCGGGAAGCCCACGGCAGTGGTCCAGCACACC  <  NC_002947/2588913‑2588766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.