New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2588895	37 (0.850)	4 (0.100)	4/244	NT	10.5%	coding (2217/2559 nt)	PP_2266	DNA‑directed RNA polymerase
	?	NC_002947	= 2588913	33 (0.790)					coding (2235/2559 nt)	PP_2266	DNA‑directed RNA polymerase

GCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGACAGCTTCGGCACCACCGCAGGGG  >  NC_002947/2588746‑2589043                                                                                                                                                      |                                                                                                                                                     gCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTG                                                                                                                                                      <  1:962071‑M1/150‑1 (MQ=255)      aaaaGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACaa                                                                                                                                                 <  1:567628/150‑1 (MQ=255)           aagaGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCAGTGGTTTTTTGCGGCGTCAAAACGGACATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCa                                                                                                                                            >  1:356830/1‑150 (MQ=255)            agagCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCaa                                                                                                                                           <  1:811234/150‑1 (MQ=255)                   ccGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGa                                                                                                                                                    <  2:345133/134‑1 (MQ=255)                   ccGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGa                                                                                                                                                    >  1:345133/1‑134 (MQ=255)                     ggTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGca                                                                                                                                  <  2:672397‑M2/150‑3 (MQ=255)                                ccACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGcc                                                                                                                       >  1:1054917/1‑150 (MQ=255)                                  aCTGCCGTGGGCTTCCCGGTGATGCAGGCGTACCACTCCGGGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGcccc                                                                                                                     >  2:1121221/1‑150 (MQ=255)                                        gTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGGGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTc                                                                                                               <  2:13060/150‑1 (MQ=255)                                          gcgcctCCCGGTGCGGCAGACGTACAGCTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGt                                                                                                             <  2:451662/145‑1 (MQ=255)                                              ttCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGt                                                                                                                                      <  1:1067029/121‑1 (MQ=255)                                              ttCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGt                                                                                                                                      >  2:1067029/1‑121 (MQ=255)                                                             gCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGcc                                                                                          >  1:918808/1‑150 (MQ=255)                                                             gCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGcc                                                                                          >  1:350080/1‑150 (MQ=255)                                                               gTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGACCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGAGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCa                                                                                        >  1:1050541/1‑150 (MQ=255)                                                                      tCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAgc                                                                                                                                               >  1:97328/1‑88 (MQ=255)                                                                      tCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAgc                                                                                                                                               <  2:97328/88‑1 (MQ=255)                                                                      tCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATg                                                                                 <  2:1107775/150‑1 (MQ=255)                                                                       ccGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGc                                                                                <  2:802579/150‑1 (MQ=255)                                                                                cTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTtg                                                                       <  1:672397/150‑1 (MQ=255)                                                                                 tCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGcgactgcttgcgcttgtccagg                                                                                                                                <  1:963677‑M1/92‑23 (MQ=255)                                                                                 tCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGcgactgcttgcgcttgtccagg                                                                                                                                >  2:963677‑M1/1‑70 (MQ=255)                                                                                 tCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTtgt                                                                      >  2:534171/1‑150 (MQ=255)                                                                                        gTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTgcgtggc                                                               >  2:1047876/1‑150 (MQ=255)                                                                                          aaaaaCGGCCATCAACGGGGCCTGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCACCTTCGTCCATAGCTGCGATGCGGCCCACATCATGCTCACCGTTGTgcgtggcgt                                                             <  1:27409/149‑1 (MQ=255)                                                                                           aaaaCGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAATAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTgcgtggcgtg                                                            <  1:237886/150‑1 (MQ=255)                                                                                                   cATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCgg                                                    >  2:175548/1‑150 (MQ=255)                                                                                                    aTCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATc                                                                                                                           >  2:346164/1‑78 (MQ=255)                                                                                                    aTCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATc                                                                                                                           <  1:346164/78‑1 (MQ=255)                                                                                                    aTCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGc                                                   >  1:415069/1‑150 (MQ=255)                                                                                                     tCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGcgactgcttgcgcttgtccagggcgtcttg                                                                                                                        <  2:1005721‑M1/80‑31 (MQ=255)                                                                                                     tCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGcgactgcttgcgcttgtccagggcgtcttg                                                                                                                        >  1:1005721‑M1/1‑50 (MQ=255)                                                                                                        aCGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGa                                               <  2:415069/150‑1 (MQ=255)                                                                                                         cGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGaa                                              <  2:356830/150‑1 (MQ=255)                                                                                                            ggCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGcag                                                                                                                                 <  1:805195‑M2/64‑4 (MQ=255)                                                                                                            ggCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGcag                                                                                                                                 >  2:805195‑M2/1‑61 (MQ=255)                                                                                                                       gcatactGATGACCGAAGAGCAAGACGCCGTGGGCAAGCGCAAGCAGTGGCAGGGGATCCGCCCCAACGTCGTCCATAGCTGCGAGGCGGCCCACCCCATGCTCACCGTTGGGCGTGGCGTGGAGTCCGGCTTGCAGAGCTTCGCgatga                                >  2:67578/6‑150 (MQ=255)                                                                                                                          tcctGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTc                                                                                                            <  2:1086792/71‑1 (MQ=255)                                                                                                                          tcctGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTc                                                                                                            >  1:1086792/1‑71 (MQ=255)                                                                                                                           cctGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCa                            <  2:350080/150‑1 (MQ=255)                                                                                                                           cctGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCa                            <  1:534171/150‑1 (MQ=255)                                                                                                                               atgaACGACGCGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGAACCTAGTTGGTAAATATCTGTGACGACACCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGAc                        <  1:79033/150‑1 (MQ=255)                                                                                                                                tgaACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGACa                       <  2:958910/150‑1 (MQ=255)                                                                                                                                    cGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGACAGCtt                   <  1:149014/150‑1 (MQ=255)                                                                                                                                           cAAGACGCCCTGGACAAGCGCAAGCAGTCGcagggcgtcttgctcttcgttcatcaggaggcgcacacgggccccgttga                                                                                  >  1:1005721‑M2/1‑30 (MQ=255)                                                                                                                                           cAAGACGCCCTGGACAAGCGCAAGCAGTCGcagggcgtcttgctcttcgttcatcaggaggcgcacacgggccccgttga                                                                                  <  2:1005721‑M2/80‑51 (MQ=255)                                                                                                                                             aGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGACAGCTTCGGcaccac          >  2:739627/1‑150 (MQ=255)                                                                                                                                                 gCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGaa                                              <  1:333357/110‑1 (MQ=255)                                                                                                                                                 gCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGaa                                              >  2:333357/1‑110 (MQ=255)                                                                                                                                                   ccTGGACAAGCGCAAGCAGTCGcagggcgtcttgctcttcgttcatcaggaggcgcacacgggccccgttgatggccgttttgacgcggcga                                                              <  1:963677‑M2/92‑71 (MQ=255)                                                                                                                                                   ccTGGACAAGCGCAAGCAGTCGcagggcgtcttgctcttcgttcatcaggaggcgcacacgggccccgttgatggccgttttgacgcggcga                                                              >  2:963677‑M2/1‑22 (MQ=255)                                                                                                                                                    cTGcgactgcttgcgcttgtccagggcgtcttgctcttcgttcatcaggaggcgcacacgggcc                                                                                         >  2:805195‑M1/1‑3 (MQ=255)                                                                                                                                                    cTGcgactgcttgcgcttgtccagggcgtcttgctcttcgttcatcaggaggcgcacacgggcc                                                                                         <  1:805195‑M1/64‑62 (MQ=255)                                                                                                                                                     tGcgactgcttgcgcttgtccagggcgtcttgctcttcgttcatcaggaggcgcacacgggccccgttgatggccgttttgacgcggcgagctaccacggagttgtacgcctgcatcaccgggaagcccacggcagtggtccagcacacc  <  2:672397‑M1/150‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCCGCAAAAGAAGAGCTGCCGGTGTGCTGGACCACTGCCGTGGGCTTCCCGGTGATGCAGGCGTACAACTCCGTGGTAGCTCGCCGCGTCAAAACGGCCATCAACGGGGCCCGTGTGCGCCTCCTGATGAACGAAGAGCAAGACGCCCTGGACAAGCGCAAGCAGTCGCAGGGGATCAGCCCCAACTTCGTCCATAGCTGCGATGCGGCCCACCTCATGCTCACCGTTGTGCGTGGCGTGGAGTCCGGCTTGAAGAGCTTCGCGATGATCCATGACAGCTTCGGCACCACCGCAGGGG  >  NC_002947/2588746‑2589043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.