New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3364786 =	29 (0.670)	4 (0.100)	4/240	NT	12.8%	coding (483/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	3364814 =	27 (0.660)					coding (455/879 nt)	PP_2961	LysR family transcriptional regulator

GATCGGGGCTTTTCTACAGCGCCACCCCGATGTGCAGATTGACCTGCGCCTGAACGATTACAACGAAGACCTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3364939‑3364786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC  >  NC_002947/3364814‑3364957                                                                                                                                                                                                                                                                                                            GATCGGGGCTTTTCTACAGCGCCACCCCGATGTGCAGATTGACCTGCGCCTGAACGATTACAACGAAGACCTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCAC                                                                                                                                                      >  2:379942/1‑150                          CCCGATGTGCAGATTGACCTGCGCCTGAACGATTACAACGAAGACCTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCAGGGGCACggc                                                                                                                                                   <  1:576293/128‑4                          CCCGATGTGCAGATTGACCTGCGCCTGAACGATTACAACGAAGACCTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCAGGGGCACggc                                                                                                                                                   >  2:576293/1‑125                                                                       CTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCA                                                                                                                                     >  2:652391/1‑97                                                                                                                  TGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAG                                                                                          >  1:652391/1‑97                                                                                                                                  GGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTT                                                                                 >  1:814072/1‑90                                                                                                                                  GGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTT                                                                                 <  2:814072/90‑1                                                                                                                                                     ACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC  <  1:14222/150‑1                                                                                                                                                       CAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC  <  1:1117135/148‑1                                                                                                                                                       CAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC  >  2:1117135/1‑148                                                                                                                                                                                                                                                                                                            GATCGGGGCTTTTCTACAGCGCCACCCCGATGTGCAGATTGACCTGCGCCTGAACGATTACAACGAAGACCTGCTCATGGAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3364939‑3364786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC  >  NC_002947/3364814‑3364957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.