| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3364786 = | 29 (0.670) | 4 (0.100) | 4/240 | NT | 12.8% | coding (483/879 nt) | PP_2961 | LysR family transcriptional regulator |
| ? | NC_002947 | 3364814 = | 27 (0.660) | coding (455/879 nt) | PP_2961 | LysR family transcriptional regulator | |||||
GGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC > NC_002947/3364671‑3364957 | ggTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGc > 2:1027350/1‑150 (MQ=255) tCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGctc < 1:214900/150‑1 (MQ=255) tCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGGTCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCaccaaa > 2:14222/1‑150 (MQ=255) agGTGAAGACGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGACATGGCGATCGAGCTAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGc < 2:607555/150‑1 (MQ=255) cGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCa < 2:719862/150‑1 (MQ=255) gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg < 1:53085/150‑1 (MQ=255) gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg > 1:372094/1‑150 (MQ=255) aGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGa > 1:379942/1‑150 (MQ=255) cTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCTGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCa < 1:910133/150‑1 (MQ=255) cTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGtt > 2:91267/1‑150 (MQ=255) tCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTg < 2:410981/150‑1 (MQ=255) ctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgaggggctggtgcccaggggcacggccaccagcCCCTCGCTCTTCa > 2:652391‑M2/85‑97 (MQ=255) ctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCa > 1:652391‑M1/57‑97 (MQ=255) gTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAAt < 1:226886/150‑1 (MQ=255) tggctggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATc > 2:764081/1‑150 (MQ=255) tggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTc > 2:642378/1‑150 (MQ=255) gcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAg < 1:91267/150‑1 (MQ=255) gATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGt < 2:480540/150‑1 (MQ=255) agcaTAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTg < 1:764081/150‑1 (MQ=255) gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg < 2:402059/150‑1 (MQ=255) gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCCCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg < 1:897319/150‑1 (MQ=255) aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac > 2:59567/1‑57 (MQ=255) aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac < 1:59567/57‑1 (MQ=255) tgaagagcgaggggctggtggccgtgcccctgggcaccagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAg > 1:652391‑M2/42‑97 (MQ=255) tgaagagcgagggGCTGGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAg > 2:652391‑M1/14‑97 (MQ=255) tCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTAGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAg > 1:350939/1‑150 (MQ=255) cGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGaaaa > 1:1080046/1‑150 (MQ=255) gccGTGCCCCTGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCggg > 2:576293‑M1/4‑128 (MQ=255) gccGTGCCCCTGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCggg < 1:576293‑M1/125‑1 (MQ=255) ggtggccgtgcccctgggcaccagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGtt > 1:814072‑M2/26‑90 (MQ=255) ggtggccgtgcccctgggcaccagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGtt < 2:814072‑M2/65‑1 (MQ=255) GTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATc > 2:379942‑M1/1‑150 (MQ=255) ccAGGGGCACGGCCACCAGCCCCTCGCTCTTCaccaaa < 2:332642/38‑1 (MQ=255) ccAGGGGCACGGCCACCAGCCCCTCGCTCTTCaccaaa > 1:332642/1‑38 (MQ=255) ccAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGt > 1:850085/1‑131 (MQ=255) ccAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGt < 2:850085/131‑1 (MQ=255) ggCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGca < 1:1027350/150‑1 (MQ=255) accagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGc < 1:14222‑M2/144‑1 (MQ=255) cagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGc > 2:1117135‑M2/5‑148 (MQ=255) cagcCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGc < 1:1117135‑M2/144‑1 (MQ=255) | GGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAAGCCCCGATCAGGGGCGCTATGCACAGC > NC_002947/3364671‑3364957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |