New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3364786 = | 29 (0.670) | 4 (0.100) | 4/240 | NT | 12.8% | coding (483/879 nt) | PP_2961 | LysR family transcriptional regulator |
? | NC_002947 | 3364814 = | 27 (0.660) | coding (455/879 nt) | PP_2961 | LysR family transcriptional regulator |
TGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAA > NC_002947/3364642‑3364930 | gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTg < 1:1117135‑M1/4‑1 (MQ=255) gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTg > 2:1117135‑M1/145‑148 (MQ=255) gctgtgcatagcgcccctgatcggggcttttctacagcgccaccccgatgtgcagattgacctgcgcctgaacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGt < 1:14222‑M1/6‑1 (MQ=255) cTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGc > 1:1059208/1‑150 (MQ=255) ccACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAgg > 2:910133/1‑150 (MQ=255) ccACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAgg < 1:743996/150‑1 (MQ=255) cACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGACCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAggg < 1:752742/150‑1 (MQ=255) tGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACg > 2:53085/1‑150 (MQ=255) ggTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGc < 1:675344/150‑1 (MQ=255) tGAAGTGCCAGAGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGcca > 1:480540/1‑150 (MQ=255) ggTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGc > 2:1027350/1‑150 (MQ=255) tCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGctc < 1:214900/150‑1 (MQ=255) tCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGGTCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCaccaaa > 2:14222/1‑150 (MQ=255) agGTGAAGACGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGACATGGCGATCGAGCTAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGc < 2:607555/150‑1 (MQ=255) cGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCa < 2:719862/150‑1 (MQ=255) gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg < 1:53085/150‑1 (MQ=255) gATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAg > 1:372094/1‑150 (MQ=255) aGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGa > 1:379942/1‑150 (MQ=255) cTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCTGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCa < 1:910133/150‑1 (MQ=255) aacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGccacc < 2:814072‑M1/25‑1 (MQ=255) aacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGccacc > 1:814072‑M1/66‑90 (MQ=255) cTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGtt > 2:91267/1‑150 (MQ=255) tCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTg < 2:410981/150‑1 (MQ=255) ctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgagggGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCa > 1:652391‑M1/57‑97 (MQ=255) gTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAAt < 1:226886/150‑1 (MQ=255) tggctggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATc > 2:764081/1‑150 (MQ=255) tggcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTc > 2:642378/1‑150 (MQ=255) gcCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAg < 1:91267/150‑1 (MQ=255) gATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGt < 2:480540/150‑1 (MQ=255) agcaTAGACTCGCCTTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTg < 1:764081/150‑1 (MQ=255) gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg < 2:402059/150‑1 (MQ=255) gcaTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCCCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTgg < 1:897319/150‑1 (MQ=255) aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac > 2:59567/1‑57 (MQ=255) aTAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCac < 1:59567/57‑1 (MQ=255) tgaagagcgagggGCTGGTGGCCGTGCCCCTGGGCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAg > 2:652391‑M1/14‑97 (MQ=255) tCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTAGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAg > 1:350939/1‑150 (MQ=255) cGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGaaaa > 1:1080046/1‑150 (MQ=255) | TGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCAGGCGCAGGTCAATCTGCACATCGGGGTGGCGCTGTAGAAAA > NC_002947/3364642‑3364930 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |