New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4558064	25 (0.580)	3 (0.070)	3/244	NT	11.1%	coding (136/267 nt)	PP_4045	hypothetical protein
	?	NC_002947	= 4558111	24 (0.580)					coding (89/267 nt)	PP_4045	hypothetical protein

TGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4557979‑4558064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGATCACCAGCGGCTCGGCGCTGATGATGGATGAAGGACAGCCGCTTGCTAGGGTAGGCGATGCTACCAGTCATGGCGGCGTCCT  <  NC_002947/4558111‑4557967                                                                                                                                                                                                                                         TGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGAT                                                                                   <  2:168471/150‑1                                      CTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGG                                                                                          <  1:856261/106‑1                                      CTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGG                                                                                          >  2:856261/1‑106                                                                                  CAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGATCACCAGCGGCTCGGCGCTGATGATGGATGAAGGACAGCCGCTTGCTAGGGTAGGCGATGCTACCAGTCATGGCGGCGTCCT  >  1:223043/1‑150                                                                                  CAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGATCACCAGCGGCTCGGCGCTGATGATGGATGAAGGACAGCCGCTTGCTAGGGTAGGCGATGCTACCAGTCATGGCGGCGTCCT  <  1:443447/150‑1                                                                                  CAGCCTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGATCACCAGCGGCTCGGCGCTGATGATGGATGAAGGACAGCCGCTTGCTAGGGTAGGCGATGCTACCAGTCATGGCGGCGTCCT  >  1:856109/1‑150                                                                                                                                                                                                                                         TGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4557979‑4558064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccTGTTCTTCGTCAACGGCAGGGCGGCCGCCAGGGTTGGCGACAGGCTCGGCTGTGGGGCGGCGATCACCAGCGGCTCGGCGCTGATGATGGATGAAGGACAGCCGCTTGCTAGGGTAGGCGATGCTACCAGTCATGGCGGCGTCCT  <  NC_002947/4558111‑4557967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.