New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4558064	25 (0.580)	3 (0.070)	3/244	NT	11.1%	coding (136/267 nt)	PP_4045	hypothetical protein
	?	NC_002947	= 4558111	24 (0.580)					coding (89/267 nt)	PP_4045	hypothetical protein

AGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCATGTAAAGCGCCACGCACTCATGCCGGCAGCGCCAATCAGAATGT  >  NC_002947/4557967‑4558253                                                                                                                                                 |                                                                                                                                               aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                                                                           >  1:223043‑M2/1‑145 (MQ=255) aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                                                                           <  1:443447‑M2/150‑6 (MQ=255) aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                                                                           >  1:856109‑M2/1‑145 (MQ=255)    ccgcctcCATAACTGATAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGACCCGCTGGCGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTTCCGTGGACGAAGAACAGGCCGGAg                                                                                                                                        <  2:100308/149‑1 (MQ=255)     cgccgcCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGc                                                                                                                                       >  2:988801/1‑150 (MQ=255)       ccgccATGACTGGTAGAATCGCCTACCCTAGCAAGCGGCTGTCCTTCGTCCATCATCAGCGCCGAGCCGGTGGTGATTGCCGCCCCACAGCCGAGCCTGTAGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCAGGAGCCg                                                                                                                                     >  2:571889/1‑150 (MQ=255)              gACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGGCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGa                                                                                                                              <  1:449178/150‑1 (MQ=255)                    tAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCtgg                                                                                                                        <  2:954825/150‑1 (MQ=255)                        aTCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTggg                                                                                                                    <  2:486975/150‑1 (MQ=255)                                  cTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAAt                                                                                                          <  1:947980/150‑1 (MQ=255)                                     gCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACCGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATggg                                                                                                       <  1:116322/150‑1 (MQ=255)                                     gCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATggg                                                                                                       <  2:954574/150‑1 (MQ=255)                                                 ccTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAggg                                                                                           <  1:681225/150‑1 (MQ=255)                                                  cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAgg                                                                                            >  1:179924/1‑148 (MQ=255)                                                  cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAgg                                                                                            <  2:179924/148‑1 (MQ=255)                                                  cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGt                                                                                          >  1:238656/1‑150 (MQ=255)                                                                              ggtgcccgccgcCCCATCGTTGCGCCTGTCGCCATCCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGt                                                              <  2:906461/144‑1 (MQ=255)                                                                                 gATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGc                                                           <  1:663309/150‑1 (MQ=255)                                                                                  aTCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaaggacagccgcttgctagggtaggcgatgctaccagtca                                                          <  2:168471‑M2/150‑87 (MQ=255)                                                                                         ccccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaag                                                                                               <  1:856261‑M2/106‑50 (MQ=255)                                                                                         ccccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaag                                                                                               >  2:856261‑M2/1‑57 (MQ=255)                                                                                           ccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATgg                                                                                                        <  1:714221/95‑1 (MQ=255)                                                                                           ccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATgg                                                                                                        >  2:714221/1‑95 (MQ=255)                                                                                            cacaGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAAt                                                >  2:475262/1‑150 (MQ=255)                                                                                             acaGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATc                                               <  1:475262/150‑1 (MQ=255)                                                                                                        tGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCATGTAAAgcgc                                    >  1:1105081/1‑150 (MQ=255)                                                                                                                  ccTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCtggtg                                                                                                                      <  1:386142/58‑1 (MQ=255)                                                                                                                  ccTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCtggtg                                                                                                                      >  2:386142/1‑58 (MQ=255)                                                                                                                              ccTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATggcag                                                                     <  2:880159/95‑1 (MQ=255)                                                                                                                              ccTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATggcag                                                                     >  1:880159/1‑95 (MQ=255)                                                                                                                                        aCGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAATCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCATGTAAAGCGCCACGCACTCATGCCGGCAGCGCCAATCAGAAt    <  1:620517/150‑1 (MQ=255)                                                                                                                                          gaagaaCAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCATGTAATGCGCCACGCACTCATGCCGGCAGCGCCAATCAGAATGt  >  1:57849/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                               AGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCATGTAAAGCGCCACGCACTCATGCCGGCAGCGCCAATCAGAATGT  >  NC_002947/4557967‑4558253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.