New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4558064	25 (0.580)	3 (0.070)	3/244	NT	11.1%	coding (136/267 nt)	PP_4045	hypothetical protein
	?	NC_002947	= 4558111	24 (0.580)					coding (89/267 nt)	PP_4045	hypothetical protein

AACCGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCA  >  NC_002947/4557916‑4558209                                                                                                                                                     |                                                                                                                                                  aaCCGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCg                                                                                                                                                  >  1:733413/1‑150 (MQ=255)  aCCGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACTGCCGa                                                                                                                                                 <  2:545653/150‑1 (MQ=255)    cGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGc                                                                                                                                               <  2:887267/150‑1 (MQ=255)    cGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGc                                                                                                                                               <  1:369194/150‑1 (MQ=255)    cGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGc                                                                                                                                               >  1:58353/1‑150 (MQ=255)       tCCCCCTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTg                                                                                                                                            <  1:196456/150‑1 (MQ=255)                  ttAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCt                                                                                                                                 >  1:906461/1‑150 (MQ=255)                     aTCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTggc                                                                                                                              <  2:129405/150‑1 (MQ=255)                                        tCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACg                                                                                                           <  2:733413/150‑1 (MQ=255)                                          gCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGa                                                                                                                                                 >  2:66202/1‑110 (MQ=255)                                          gCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGa                                                                                                                                                 <  1:66202/110‑1 (MQ=255)                                          gCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACgaa                                                                                                         <  2:58353/150‑1 (MQ=255)                                           ccATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACgaag                                                                                                        <  1:136548/150‑1 (MQ=255)                                                    aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                               >  1:223043‑M2/1‑145 (MQ=255)                                                    aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                               <  1:443447‑M2/150‑6 (MQ=255)                                                    aGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctg                                                                                               >  1:856109‑M2/1‑145 (MQ=255)                                                       ccgcctcCATAACTGATAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGACCCGCTGGCGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTTCCGTGGACGAAGAACAGGCCGGAg                                                                                            <  2:100308/149‑1 (MQ=255)                                                        cgccgcCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGc                                                                                           >  2:988801/1‑150 (MQ=255)                                                          ccgccATGACTGGTAGAATCGCCTACCCTAGCAAGCGGCTGTCCTTCGTCCATCATCAGCGCCGAGCCGGTGGTGATTGCCGCCCCACAGCCGAGCCTGTAGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCAGGAGCCg                                                                                         >  2:571889/1‑150 (MQ=255)                                                                tGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtggggcggcgat                                                                                   <  2:168471‑M1/150‑65 (MQ=255)                                                                 gACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGGCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGa                                                                                  <  1:449178/150‑1 (MQ=255)                                                                       tAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCtgg                                                                            <  2:954825/150‑1 (MQ=255)                                                                           aTCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTggg                                                                        <  2:486975/150‑1 (MQ=255)                                                                                     cTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAAt                                                              <  1:947980/150‑1 (MQ=255)                                                                                        gCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACCGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATggg                                                           <  1:116322/150‑1 (MQ=255)                                                                                        gCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATggg                                                           <  2:954574/150‑1 (MQ=255)                                                                                                    ccTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAggg                                               <  1:681225/150‑1 (MQ=255)                                                                                                     cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtgggg                                                                                          <  1:856261‑M1/106‑58 (MQ=255)                                                                                                     cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtgggg                                                                                          >  2:856261‑M1/1‑49 (MQ=255)                                                                                                     cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAgg                                                >  1:179924/1‑148 (MQ=255)                                                                                                     cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAgg                                                <  2:179924/148‑1 (MQ=255)                                                                                                     cTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGt                                              >  1:238656/1‑150 (MQ=255)                                                                                                                                 ggtgcccgccgcCCCATCGTTGCGCCTGTCGCCATCCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGt                  <  2:906461/144‑1 (MQ=255)                                                                                                                                    gATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGc               <  1:663309/150‑1 (MQ=255)                                                                                                                                     aTCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaaggacagccgcttgctagggtaggcgatgctaccagtca              <  2:168471‑M2/150‑87 (MQ=255)                                                                                                                                            ccccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaag                                                   >  2:856261‑M2/1‑57 (MQ=255)                                                                                                                                            ccccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaag                                                   <  1:856261‑M2/106‑50 (MQ=255)                                                                                                                                              ccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATgg                                                            >  2:714221/1‑95 (MQ=255)                                                                                                                                              ccACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATgg                                                            <  1:714221/95‑1 (MQ=255)                                                                                                                                               cacaGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAAt    >  2:475262/1‑150 (MQ=255)                                                                                                                                                acaGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATc   <  1:475262/150‑1 (MQ=255)                                                                                                                                                 caGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaaggacagccgcttgctagggtaggcgatgctaccagtcatggcggcgtcct  >  1:223043‑M1/1‑5 (MQ=255)                                                                                                                                                 caGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaaggacagccgcttgctagggtaggcgatgctaccagtcatggcggcgtcct  <  1:443447‑M1/150‑146 (MQ=255)                                                                                                                                                 caGCCtgttcttcgtcaacggcagggcggccgccagggttggcgacaggctcggctgtggggcggcgatcaccagcggctcggcgctgatgatggatgaaggacagccgcttgctagggtaggcgatgctaccagtcatggcggcgtcct  >  1:856109‑M1/1‑5 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AACCGCTCCCACTTCGCTTAATCGAGCAACCAACTGTTATCGCCATTTTCCAGGACGCCGCCATGACTGGTAGCATCGCCTACCCTAGCAAGCGGCTGTCCTTCATCCATCATCAGCGCCGAGCCGCTGGTGATCGCCGCCCCACAGCCGAGCCTGTCGCCAACCCTGGCGGCCGCCCTGCCGTTGACGAAGAACAGGCTGGAGCCGCTGCTGACGCTGGTGGGGCCGCACAATGGGCAATGGTGAGGGTGACCAAGCAGAACGATGGCAGGCATTGTCGCCACTCCTGAATCA  >  NC_002947/4557916‑4558209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.