New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5454666 | NA (NA) | 3 (0.070) | 3/244 | NT | 8.9% | coding (1277/1329 nt) | PP_4791 | transposase |
? | NC_002947 | = 5552936 | 32 (0.740) | intergenic (+551/+110) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
CCAGAAGCCAAGACCGGCAGGTCCGg‑‑‑‑‑gctt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5454642‑5454666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT < NC_002947/5552936‑5552783 CCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACAAACTTATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTA > 1:790046/1‑150 AAGCCAAGACCGGCAGGTCCGG‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACC < 1:889998/92‑1 AAGCCAAGACCGGCAGGTCCGG‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACC > 2:889998/1‑92 TCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT > 2:799385/1‑150 CCAGAAGCCAAGACCGGCAGGTCCGg‑‑‑‑‑gctt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5454642‑5454666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT < NC_002947/5552936‑5552783 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |