New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5454666	NA (NA)	3 (0.070)	3/244	NT	8.9%	coding (1277/1329 nt)	PP_4791	transposase
	?	NC_002947	= 5552936	32 (0.740)					intergenic (+551/+110)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

ATCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAT  >  NC_002947/5552793‑5553084                                                                                                                                                     |                                                                                                                                                     aTCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAAGAATTCCGAACCATTAGC‑‑‑‑‑CAAGAcc                                                                                                                                                >  2:907183/1‑150 (MQ=255)                      cGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTc                                                                                                                           <  2:1036390/150‑1 (MQ=255)                         tACTCATTTTCGCGCTCTCATAAGTCACTGCGCATAAGTTTGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCAAAGCCcggacctgccggtcttggcttctgg                                                                                                                             >  1:790046‑M2/1‑125 (MQ=255)                             cATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGc                                                                                                                    <  2:490999/150‑1 (MQ=255)                                          tcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTgggg                                                                                                       >  1:63894/1‑150 (MQ=255)                                            aTAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCggg                                                                                                                                    >  1:210204/1‑119 (MQ=255)                                            aTAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCggg                                                                                                                                    <  2:210204/119‑1 (MQ=255)                                                gTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAg                                                                                                 >  2:811646/1‑150 (MQ=255)                                                        gcATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTcc                                                                                                                                       <  1:627561/104‑1 (MQ=255)                                                        gcATCAGTTGGTACGTCTGGTGTACAGCCGGTGCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTcc                                                                                                                                       >  2:627561/1‑104 (MQ=255)                                                           tCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGgctgc                                                                                      <  1:819537/150‑1 (MQ=255)                                                               ttGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa                                                                                  >  2:775004/1‑150 (MQ=255)                                                                  gTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAgtg                                                                               >  1:154521/1‑150 (MQ=255)                                                                         tGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCg                                                                                                                          >  2:973564/1‑100 (MQ=255)                                                                         tGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCg                                                                                                                          <  1:973564/100‑1 (MQ=255)                                                                          ggTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑Ccggacctgccggtcttggctt                                                                                                                                 >  2:889998‑M2/1‑71 (MQ=255)                                                                          ggTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑Ccggacctgccggtcttggctt                                                                                                                                 <  1:889998‑M2/92‑22 (MQ=255)                                                                           gtgtACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGaaaa                                                                      >  1:602872/1‑150 (MQ=255)                                                                            tgtACAGCCGGTTCAACAAGAAGCAGGCTTATGCTGAACAAGGTGTTCAGCAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTGGGCTTCGTAAAGCCCGGCAACTGGGGTTTCGTCTGGTGGTTGTTTGAGTGTTGAGaaaaa                                                                     >  2:1002560/1‑149 (MQ=17)                                                                                cAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATg                                                                 <  2:602872/150‑1 (MQ=255)                                                                                 aGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATgg                                                                <  1:811646/150‑1 (MQ=255)                                                                                   ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt                                                                                                     >  1:333460/1‑111 (MQ=255)                                                                                   ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt                                                                                                     <  2:333460/111‑1 (MQ=255)                                                                                   ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa                                                                                  >  1:130073/1‑130 (MQ=255)                                                                                   ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa                                                                                  <  2:130073/130‑1 (MQ=255)                                                                                         cACCAAGAAGCAGTCTGATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCAtt                                                        <  2:179544/150‑1 (MQ=255)                                                                                            cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTg                                                     >  1:539278/1‑150 (MQ=255)                                                                                                 agCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTGTGa                                                <  2:591388/150‑1 (MQ=255)                                                                                                   cAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGAcc                                              >  1:121393/1‑150 (MQ=255)                                                                                                   cAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGAcc                                              >  1:680995/1‑150 (MQ=255)                                                                                                            gCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTAc                                     <  1:675327/150‑1 (MQ=255)                                                                                                            gCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGACCGTAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTAc                                     <  1:350644/150‑1 (MQ=255)                                                                                                                  cAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAg                               >  1:838338/1‑150 (MQ=255)                                                                                                                                aTTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAg                 <  1:775004/150‑1 (MQ=255)                                                                                                                                          aGAAGG‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACAAGGGCTTACCTCAAGTAATCTATCCAAAGAAAAAAAAGa       <  2:346787/150‑1 (MQ=255)                                                                                                                                               c‑‑‑‑‑cAAGCCCGGCATGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAACACAATGTGTTGCATGCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAt  <  1:429078/150‑1 (MQ=25)                                                                                                                                                     |                                                                                                                                                     ATCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAT  >  NC_002947/5552793‑5553084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.