New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5454666	NA (NA)	3 (0.070)	3/244	NT	8.9%	coding (1277/1329 nt)	PP_4791	transposase
	?	NC_002947	= 5552936	32 (0.740)					intergenic (+551/+110)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGG  >  NC_002947/5454610‑5454815                                                         |                                                                                                                                                        ttATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGc                                                          >  1:450373/1‑150 (MQ=11)   aTGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCgg                                                        <  1:668129/150‑1 (MQ=32)    tGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCggg                                                       >  1:221943/1‑150 (MQ=32)     gTTAAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGt                                                      <  1:1117433/150‑1 (MQ=17)      ttGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGC‑TAGAGAAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGtt                                                     >  1:790081/1‑150 (MQ=255)       gtaaCAAGGTCTTGAGGAGTTCGAAACCAGAAGCAAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGttt                                                    <  2:790081/148‑1 (MQ=17)          aCAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTAcc                                                 >  2:844052/1‑150 (MQ=35)           cAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTAccc                                                <  2:14143/150‑1 (MQ=34)               gTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGa                                            >  1:128163/1‑150 (MQ=35)                tCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGaa                                           <  2:54036/150‑1 (MQ=34)                  ttGAGGAGTTCGAAACCAGAAGCCGAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATa                                         <  2:1096565/150‑1 (MQ=38)                    gaggagTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACg                                       <  1:1054672/150‑1 (MQ=38)                    gaggagTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACg                                       <  2:450373/150‑1 (MQ=38)                             gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGACTACCGTATTcgcg                              <  2:221943/150‑1 (MQ=255)                             gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTcgcg                              >  1:57146/1‑150 (MQ=255)                             gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGAATTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTcgcg                              >  2:445361/1‑150 (MQ=255)                                aCCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCa                           >  2:643787/1‑150 (MQ=255)                                 ccAGAAGCCAAGACCGGTAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCaa                          <  2:197444/150‑1 (MQ=255)                                 ccAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAACGCCCGGAAATTCGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑ACACAATGGGAT‑CATTCTGGCGGGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCaa                          <  1:869500/150‑1 (MQ=14)                                   aGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACg                        >  2:250649/1‑150 (MQ=255)                                    gAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACgg                       <  2:8340/150‑1 (MQ=255)                                         cAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAAc                  <  2:57146/150‑1 (MQ=255)                                             aCCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAAcggcg              <  1:209064/150‑1 (MQ=255)                                                         gggCTTTGCGAAGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTgg  >  2:1082794/1‑150 (MQ=255)                                                         |                                                                                                                                                        TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGG  >  NC_002947/5454610‑5454815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.