New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	275497 =	51 (1.180)	3 (0.070)	3/244	NT	5.6%	coding (451/1386 nt)	PP_0222	DszA family monooxygenase
	?	NC_002947	275525 =	52 (1.250)					coding (423/1386 nt)	PP_0222	DszA family monooxygenase

CTGAACCTTGCGCACCTTGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGTAAGG  >  NC_002947/275348‑275642                                                                                                                                                       |                                                                                                                                                    cTGAACCGTGCGCACCTTGTCGGTCTTGGCATAGACGCGAGGCGCTCGGTCTGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCGTGTACAACACCTACAGGTATGCATCGGCCCGGGCGTAGCGGCGATCATGCTCCGGTtg                                                                                                                                                     >  2:499946/1‑150 (MQ=255)   gAACCTTGCGCACCTTGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTtgct                                                                                                                                                   >  2:441873/1‑150 (MQ=255)      ccTTGCGCACCTTGTCGGGCGTGGCATAGCCGCGACCTTAGCAGTCACTGTTTGCTTGGACTGCGGCGCAGTGGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTgcg                                                                                                                                                >  1:21541/1‑150 (MQ=255)              aCCTTGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGccc                                                                                                                                        >  1:464628/1‑150 (MQ=255)               ccTTGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCa                                                                                                                                       <  2:464628/150‑1 (MQ=255)                 ttGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGATCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATg                                                                                                                                     <  2:688139/150‑1 (MQ=255)                 ttGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCACGGTCGAAGCGGTGTTCATGCGCCGGCTGCGCCGCCTGGCCCAtt                                                                                                                                     >  2:1088830/1‑149 (MQ=255)                             gCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAgcg                                                                                                                       >  1:897043/1‑150 (MQ=255)                               aTAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCt                                                                                                                     >  1:221146/1‑150 (MQ=255)                                  gACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGCACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTc                                                                                                                  <  1:639586/150‑1 (MQ=255)                                    cgcgATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGa                                                                                                                <  2:221146/150‑1 (MQ=255)                                    cgcgATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑ACCAGGAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGa                                                                                                                <  1:618190/150‑1 (MQ=255)                                       gATGCTCGCGGTCGGCGACCACTGCGTCATCGCGTACGCTACGTCTGCTTCCAGTT‑TACAACACCTGCAGATGGTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCCCTGTCGAggc                                                                                                             >  1:193438/1‑149 (MQ=255)                                        aTGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTa                                                                                                            >  2:975313/1‑150 (MQ=255)                                            tCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCg                                                                                                        >  2:338599/1‑150 (MQ=255)                                               cgGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTg                                                                                                     <  2:637092/150‑1 (MQ=255)                                                ggTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCCGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGa                                                                                                    <  1:1045171/150‑1 (MQ=255)                                                      cGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGt                                                                                              <  2:451579/150‑1 (MQ=255)                                                                       gCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTCCCGCCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCa                                                                             >  1:192390/1‑150 (MQ=255)                                                                       gCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGACCGGGTTGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCa                                                                             >  1:869175/1‑150 (MQ=255)                                                                         ccAGCTACCT‑TCCAGCATCTTCTACAACACCTGCAGTTATTCATCCTCCTGGTCGTATCGGCCATCATGCTCCTGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGTTAACCGGTTACAATGTGCCAGCCCACCCGGCCAtt                                                                           <  1:543430/150‑1 (MQ=255)                                                                          cAGCTGCCT‑TCCCGAAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTg                                                                          <  1:499946/150‑1 (MQ=255)                                                                                  t‑tCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAggtg                                                                  >  1:196665/1‑150 (MQ=255)                                                                                             ttGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGtgtg                                                        <  2:995187/150‑1 (MQ=255)                                                                                                tACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGaa                                                     >  2:1109753/1‑150 (MQ=255)                                                                                                 acaacaCCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGaaa                                                    <  2:666598/150‑1 (MQ=255)                                                                                                 acaacaCCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGaaa                                                    <  1:1073306/150‑1 (MQ=255)                                                                                                   aacaCCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGa                                                                                                                >  1:183701/1‑88 (MQ=255)                                                                                                   aacaCCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGa                                                                                                                <  2:183701/88‑1 (MQ=255)                                                                                                      acCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGAGTGGAAAGgcgc                                               >  2:935784/1‑150 (MQ=255)                                                                                                         tGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGt                                                                                                      >  1:167028/1‑92 (MQ=255)                                                                                                         tGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGt                                                                                                      <  2:167028/92‑1 (MQ=255)                                                                                                         caatggccgggtgggctggaacattgtcaccggctacctcgacagcGCTGCGCCAGGCCCATGGCCC‑gg‑g                                                                                                                            <  2:105691‑M1/24‑1 (MQ=255)                                                                                                         caatggccgggtgggctggaacattgtcaccggctacctcgacagcGCTGCGCCAGGCCCATGGCCC‑gg‑g                                                                                                                            >  1:105691‑M1/47‑70 (MQ=255)                                                                                                           cAGGTATTCATCGGCCTGGTCGGAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCA‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGc                                          <  2:136248/150‑1 (MQ=255)                                                                                                               tATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGtgtg                                                        <  1:417763/132‑1 (MQ=255)                                                                                                               tATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGtgtg                                                        >  2:417763/1‑132 (MQ=255)                                                                                                                   cATCGGCCTGGTCGTAGCGGCGATCATGCTCTGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGt                                  <  1:113712/150‑1 (MQ=255)                                                                                                                    aTCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAg                                                                                                                                            <  1:845010/45‑1 (MQ=255)                                                                                                                    aTCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAg                                                                                                                                            >  2:845010/1‑45 (MQ=255)                                                                                                                    aTCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTa                                 >  2:842516/1‑150 (MQ=255)                                                                                                                    aTCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGGAGCCGATGACAATGTTCATGCCCACCCGGCCATTGCTCAGGTGGTCGAGGGTGGAAAGGCGCCGGGCGAACAGGTa                                 >  1:685490/1‑150 (MQ=38)                                                                                                                     tCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTCGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAGGGCTCCTGGCGAACAGGTAc                                >  2:527054/1‑150 (MQ=255)                                                                                                                     tCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTAc                                >  1:513597/1‑150 (MQ=255)                                                                                                                             gTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGGACAGGTACGGCGCCTc                        <  1:975313/150‑1 (MQ=255)                                                                                                                               cGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCgg                                                                                >  1:1098818/1‑92 (MQ=255)                                                                                                                               cGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCgg                                                                                <  2:1098818/92‑1 (MQ=255)                                                                                                                                          tCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTg           >  2:500048/1‑150 (MQ=255)                                                                                                                                            aTGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTa                     <  1:1111637/138‑1 (MQ=255)                                                                                                                                            aTGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTa                     >  2:1111637/1‑138 (MQ=255)                                                                                                                                             tGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCg        <  1:500048/150‑1 (MQ=255)                                                                                                                                               tcgacagcGCTGC‑CCGGGCC‑ATGGGCCTGGCGCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGt      <  2:522086‑M1/142‑1 (MQ=255)                                                                                                                                               cTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGc                                                                                        <  2:966490/68‑1 (MQ=255)                                                                                                                                               cTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGc                                                                                        >  1:966490/1‑68 (MQ=255)                                                                                                                                                tCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGTa     >  2:59315/1‑150 (MQ=255)                                                                                                                                                 ccGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGTaa    <  1:842516/150‑1 (MQ=255)                                                                                                                                                   ggTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGTAAgg  <  2:212586/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    CTGAACCTTGCGCACCTTGTCGGGCGTGGCATAGACGCGATGCTCGCGGTCGGCGACCACTGCGTCATCGGCCCAGCTGCCT‑TCCAGCAGCTTGTACAACACCTGCAGGTATTCATCGGCCTGGTCGTAGCGGCGATCATGCTCCGGTTGCTGCGCCAGGCCCATGGCCC‑GG‑GCAGCGCTGTCGAGGTAGCCGGTGACAATGTTCCAGCCCACCCGGCCATTGCTCAGGTGGTCGAGTGTGGAAAGGCGCCGGGCGAACAGGTACGGCGCCTCGTAGGTGAGGTTGGCGGTAAGG  >  NC_002947/275348‑275642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.