New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1320348	38 (0.880)	3 (0.070)	3/242	NT	7.3%	coding (2389/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1320381	40 (0.970)					coding (2356/2586 nt)	PP_1154	sensory box protein

ACCCGGCGCTGTCCAGGGGCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCT  >  NC_002947/1320201‑1320497                                                                                                                                                    |                                                                                                                                                      aCCCGGCGCTGTCCATGCGCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGa                                                                                                                                                     <  2:27686/150‑1 (MQ=255)   ccGGCGCTGTCCAGGGGCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGAcc                                                                                                                                                   >  1:24764/1‑150 (MQ=255)          tGTCCAGGGGCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAgcgc                                                                                                                                            >  1:547555/1‑150 (MQ=255)                ggggCTTGCTCAGGTAATAGCCTTGCACTTCACGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTGCGGCTGTCCCTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGc                                                                                                                                      <  1:473003/150‑1 (MQ=255)                 gggCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCt                                                                                                                                     <  1:679217/150‑1 (MQ=255)                  ggCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTg                                                                                                                                    <  2:24764/150‑1 (MQ=255)                         tCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCgt                                                                                                                             >  2:548333/1‑150 (MQ=255)                                aTAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGt                                                                                                                                         <  1:1011703/131‑1 (MQ=255)                                aTAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGt                                                                                                                                         >  2:1011703/1‑131 (MQ=255)                                 tAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACTCTTTTCACGCTGACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGaacaacaacggcggcagcgaccgcgctgtggtcc                                                                                                                     <  1:569827‑M1/150‑35 (MQ=255)                                    ccTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcagg                                                                                                                  <  1:771900‑M2/150‑5 (MQ=255)                                      ttGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggcc                                                                                                                <  2:887592‑M2/150‑7 (MQ=255)                                            ttCATGGCAGCGGTCCTTTTCCAGCGACTTGATTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGTCCCATCGCCTCGCCCAGGTGGTTGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtgtt                                                                                                          >  2:503743/1‑148 (MQ=255)                                                    aGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCt                                                                                                  <  2:547555/150‑1 (MQ=255)                                                        gTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGta                                                                                              <  1:927689/150‑2 (MQ=255)                                                           cTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGAt                                                                                           >  2:347558/1‑150 (MQ=255)                                                                ccAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGa                                                                                      <  2:998042/150‑1 (MQ=255)                                                                  aGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                    >  2:950397/1‑150 (MQ=255)                                                                               gATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACgggg                                                                       >  2:868364/1‑149 (MQ=255)                                                                               gATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTAGCCAAGGGTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggt                                                                       >  1:307550/1‑150 (MQ=255)                                                                                aTGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggta                                                                      >  1:59658/1‑150 (MQ=255)                                                                                 tGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTCGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggtag                                                                     <  1:347558/150‑1 (MQ=255)                                                                                 tGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCGGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggtag                                                                     <  1:338754/150‑1 (MQ=255)                                                                                  gTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACg                                                                          >  2:797959/1‑144 (MQ=255)                                                                                  gTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACg                                                                          <  1:797959/144‑1 (MQ=255)                                                                                   ttCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                    >  1:675336/1‑133 (MQ=255)                                                                                   ttCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                    <  2:675336/133‑1 (MQ=255)                                                                                    tCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGt                                                                                <  1:906028/136‑1 (MQ=255)                                                                                    tCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGt                                                                                >  2:906028/1‑136 (MQ=255)                                                                                             aCGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCGGCTAGTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGTACGGGGTGGTACGCAGGTAg                                                         >  1:20445/1‑150 (MQ=255)                                                                                                  ttCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCaa                                                    >  1:491752/1‑150 (MQ=255)                                                                                                        tgtcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtg                                                                                                            >  1:666554/1‑88 (MQ=255)                                                                                                        tgtcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtg                                                                                                            <  2:666554/88‑1 (MQ=255)                                                                                                          tcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGaacaacaacggcggcagcgaccgcgctgtggtccag                                                                                                                   <  1:536765‑M1/79‑37 (MQ=255)                                                                                                          tcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGaacaacaacggcggcagcgaccgcgctgtggtccag                                                                                                                   >  2:536765‑M1/1‑43 (MQ=255)                                                                                                           cactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGTCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATa                                           >  2:1411/1‑150 (MQ=255)                                                                                                                   gCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGCAGGCGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGc                                   >  1:560254/1‑150 (MQ=255)                                                                                                                    ccccATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAGCGACGAATAGCCGGTGcc                                  >  1:90557/1‑150 (MQ=255)                                                                                                                        aTCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGaaa                              >  1:58190/1‑150 (MQ=255)                                                                                                                            cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGccc                                                      >  1:621044/1‑122 (MQ=255)                                                                                                                            cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGccc                                                      <  2:621044/122‑1 (MQ=255)                                                                                                                            cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAgtcat                          <  2:491752/150‑1 (MQ=255)                                                                                                                                      gTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAg                >  1:206402/1‑150 (MQ=255)                                                                                                                                           tgatgGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCa           >  1:990325/1‑150 (MQ=255)                                                                                                                                              tgGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCCTGTTCAGGCGCAccc        >  1:953855/1‑150 (MQ=255)                                                                                                                                               ggCCTGaacaacaacggcggcagcgaccgcgctgtggtccaggccatcatcaacctgggcgaggcgatggggctgacagtgacagccgaaggcgtggaaagcgaacatcaactcaagtcgctggaaaaggaccgctgccatgaagtgcaa       <  2:887592‑M1/150‑145 (MQ=255)                                                                                                                                                 ccTGaacaacaacggcggcagcgaccgcgctgtggtccaggccatcatcaacctgggcgaggcgatggggctgacagtgacagccgaaggcgtggaaagcgaacatcaactcaagtcgctggaaaaggaccgctgccatgaagtgcaagg     <  1:771900‑M1/150‑147 (MQ=255)                                                                                                                                                  cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtga                                                                           >  2:536765‑M2/1‑36 (MQ=255)                                                                                                                                                  cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtga                                                                           <  1:536765‑M2/79‑44 (MQ=255)                                                                                                                                                  cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAg    >  1:347979/1‑150 (MQ=255)                                                                                                                                                    ggACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtcagcgtgaaaagagtggaaagcgaacatcaactcaagtcgctggaaaaggaccgctgccatgaagtgcaaggcta  <  1:569827‑M2/150‑117 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ACCCGGCGCTGTCCAGGGGCTTGCTCAGGTAATAGCCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCT  >  NC_002947/1320201‑1320497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.