New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1320348	38 (0.880)	3 (0.070)	3/242	NT	7.3%	coding (2389/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1320381	40 (0.970)					coding (2356/2586 nt)	PP_1154	sensory box protein

CCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAATGCGCC  >  NC_002947/1320236‑1320528                                                                                                                                                  |                                                                                                                                                    ccTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcagg                                                                                                                                                 <  1:771900‑M2/150‑5 (MQ=255)   ttGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggcc                                                                                                                                               <  2:887592‑M2/150‑7 (MQ=255)         ttCATGGCAGCGGTCCTTTTCCAGCGACTTGATTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGTCCCATCGCCTCGCCCAGGTGGTTGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtgtt                                                                                                                                         >  2:503743/1‑148 (MQ=255)                 aGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCt                                                                                                                                 <  2:547555/150‑1 (MQ=255)                     gTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGta                                                                                                                             <  1:927689/150‑2 (MQ=255)                        cTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGAt                                                                                                                          >  2:347558/1‑150 (MQ=255)                             ccAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGa                                                                                                                     <  2:998042/150‑1 (MQ=255)                               aGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                                                   >  2:950397/1‑150 (MQ=255)                                            gATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACgggg                                                                                                      >  2:868364/1‑149 (MQ=255)                                            gATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTAGCCAAGGGTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggt                                                                                                      >  1:307550/1‑150 (MQ=255)                                             aTGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggta                                                                                                     >  1:59658/1‑150 (MQ=255)                                              tGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTCGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggtag                                                                                                    <  1:347558/150‑1 (MQ=255)                                              tGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCGGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGggtag                                                                                                    <  1:338754/150‑1 (MQ=255)                                               gTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACg                                                                                                         <  1:797959/144‑1 (MQ=255)                                               gTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACg                                                                                                         >  2:797959/1‑144 (MQ=255)                                                ttCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                                                   >  1:675336/1‑133 (MQ=255)                                                ttCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATg                                                                                                                   <  2:675336/133‑1 (MQ=255)                                                 tCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGt                                                                                                               >  2:906028/1‑136 (MQ=255)                                                 tCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGt                                                                                                               <  1:906028/136‑1 (MQ=255)                                                          aCGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCGGCTAGTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGTACGGGGTGGTACGCAGGTAg                                                                                        >  1:20445/1‑150 (MQ=255)                                                               ttCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCaa                                                                                   >  1:491752/1‑150 (MQ=255)                                                                     tgtcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtg                                                                                                                                           <  2:666554/88‑1 (MQ=255)                                                                     tgtcactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCtg                                                                                                                                           >  1:666554/1‑88 (MQ=255)                                                                        cactgtcaGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGTCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATa                                                                          >  2:1411/1‑150 (MQ=255)                                                                                gCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGCAGGCGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGc                                                                  >  1:560254/1‑150 (MQ=255)                                                                                 ccccATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAGCGACGAATAGCCGGTGcc                                                                 >  1:90557/1‑150 (MQ=255)                                                                                     aTCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGaaa                                                             >  1:58190/1‑150 (MQ=255)                                                                                         cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGccc                                                                                     <  2:621044/122‑1 (MQ=255)                                                                                         cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGccc                                                                                     >  1:621044/1‑122 (MQ=255)                                                                                         cctcgccCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAgtcat                                                         <  2:491752/150‑1 (MQ=255)                                                                                                   gTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAg                                               >  1:206402/1‑150 (MQ=255)                                                                                                        tgatgGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCa                                          >  1:990325/1‑150 (MQ=255)                                                                                                           tgGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCCTGTTCAGGCGCAccc                                       >  1:953855/1‑150 (MQ=255)                                                                                                               cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtga                                                                                                          <  1:536765‑M2/79‑44 (MQ=255)                                                                                                               cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtga                                                                                                          >  2:536765‑M2/1‑36 (MQ=255)                                                                                                               cTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAg                                   >  1:347979/1‑150 (MQ=255)                                                                                                                 ggACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTcaggccatcatcaacctgggcgaggcgatggggctgacagtcagcgtgaaaagagtggaaagcgaacatcaactcaagtcgctggaaaaggaccgctgccatgaagtgcaaggcta                                 <  1:569827‑M2/150‑117 (MQ=255)                                                                                                                   aCCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGTAGCGCTTGTCGATCTTGATGCTg                                                                                                                <  2:554455/69‑1 (MQ=255)                                                                                                                   aCCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTg                                                                                                                >  1:554455/1‑69 (MQ=255)                                                                                                                    ccACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCt                              >  1:139460/1‑150 (MQ=255)                                                                                                                            cgGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGAc                      <  1:887592/150‑1 (MQ=255)                                                                                                                             ggTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACa                     <  2:139460/150‑1 (MQ=255)                                                                                                                                  cTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCATCCCTAGCTCCTTGAGCGACAGCATg                <  2:59658/150‑1 (MQ=255)                                                                                                                                  cTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATg                <  2:347979/150‑1 (MQ=255)                                                                                                                                     ccgccgTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTg             >  1:820116/1‑150 (MQ=255)                                                                                                                                      cgccgTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGc            <  1:548333/150‑1 (MQ=255)                                                                                                                                       gccgTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGcc           <  2:58190/150‑1 (MQ=255)                                                                                                                                           ttgttgttCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAAt       <  2:820116/150‑1 (MQ=255)                                                                                                                                              ttgntCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAATgcg    >  2:700703/1‑150 (MQ=255)                                                                                                                                               tgttCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAATgcgc   >  2:885481/1‑150 (MQ=255)                                                                                                                                                gttCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACCGGAAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGCAACCATACATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAATGCGcc  >  1:757828/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCTTGCACTTCATGGCAGCGGTCCTTTTCCAGCGACTTGAGTTGATGTTCGCTTTCCACGCCTTCGGCTGTCACTGTCAGCCCCATCGCCTCGCCCAGGTTGATGATGGCCTGGACCACAGCGCGGTCGCTGCCGCCGTTGTTGTTCAGGCCGCTGATGAAGCGCTTGTCGATCTTGATGCTGTCGAACGGGTAGGTACGCAGGTAGCCCAACGACGAATAGCCGGTGCCGAAATCATCCATGTTCAGGCGCACCCCTAGCTCCTTGAGCGACAGCATGGTGCCTAATGCGCC  >  NC_002947/1320236‑1320528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.