New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2645464	27 (0.620)	3 (0.070)	3/236	NT	10.2%	coding (1893/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2645496	28 (0.700)					coding (1861/2499 nt)	PP_2316	ABC transporter permease

ACAGCGCGACGACATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGC  >  NC_002947/2645316‑2645611                                                                                                                                                     |                                                                                                                                                    aCAGCGCGACGACATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGCACATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGAcgc                                                                                                                                                    >  1:290873/1‑150 (MQ=255)    gcgcGACGACATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCggg                                                                                                                                                 >  2:45747/1‑150 (MQ=255)       cgacgaCATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCt                                                                                                                                              <  1:83729/150‑1 (MQ=255)         acgacATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTgg                                                                                                                                            <  1:940377/150‑1 (MQ=255)              aTCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCgctg                                                                                                                                       >  1:1038314/1‑150 (MQ=255)                 cAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGctgctg                                                                                                                                    <  2:1038314/150‑1 (MQ=255)                  aGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTgg                                                                                                                                   >  1:272159/1‑150 (MQ=255)                    gTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGgcc                                                                                                                                 <  2:946217/150‑1 (MQ=255)                           cccGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAata                                                                                                                          >  1:598592/1‑150 (MQ=255)                                   cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGATGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt                                                                                                                  >  1:293700‑M2/1‑147 (MQ=255)                                   cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt                                                                                                                  <  2:402495‑M2/150‑4 (MQ=255)                                    aGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGttcgatattggcggccagcagcgccaggcccgcgtc                                                                                                                 >  2:80136‑M1/1‑114 (MQ=255)                                         gAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGttcgatattggcggccagcagcgccaggcccgcgtcagcag                                                                                                            <  1:80136‑M1/150‑42 (MQ=255)                                          aaGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGttcgatattggcggccagcagcgccaggcccgcgtcagcagc                                                                                                           <  1:157333‑M1/150‑43 (MQ=255)                                           aGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGt                                                                                                          <  1:402495/150‑1 (MQ=255)                                                  cAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCAt                                                                                                   <  2:598592/150‑1 (MQ=255)                                                    ggTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCt                                                                                                 <  1:998230/150‑1 (MQ=255)                                                              cGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAg                                                                                       <  1:279133/150‑1 (MQ=255)                                                               ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAgg                                                                                      <  1:1033678/150‑1 (MQ=255)                                                               ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCCCCCATCTGCAGTTTCAgg                                                                                      >  2:264083/1‑150 (MQ=255)                                                                        tGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGcc                                                                             >  1:476656/1‑150 (MQ=255)                                                                            gCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGc                                                                                                                                                >  2:953006/1‑79 (MQ=255)                                                                            gCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGc                                                                                                                                                <  1:953006/79‑1 (MQ=255)                                                                            gCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGCCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGtt                                                                         >  2:463525/1‑150 (MQ=255)                                                                                gCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGACCCGttacac                                                                     <  2:884476/150‑5 (MQ=255)                                                                                         gAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCCCCGa                                                            >  2:255287/1‑150 (MQ=255)                                                                                                  gTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCggg                                                   <  1:600392/150‑1 (MQ=255)                                                                                                   aaGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCgggg                                                  >  1:1007364/2‑150 (MQ=255)                                                                                                                 gAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGGTCCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGc                                    <  1:67366/150‑1 (MQ=255)                                                                                                                  aaGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCt                                   <  1:45747/150‑1 (MQ=255)                                                                                                                      tGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCACGGGGATATCGTTGTCGGCTGGCa                               <  2:272159/150‑1 (MQ=255)                                                                                                                          ccAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCAAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGc                           >  1:691272/1‑150 (MQ=255)                                                                                                                                 aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac                    <  2:476656/150‑1 (MQ=255)                                                                                                                                 aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac                    >  1:339464/1‑150 (MQ=255)                                                                                                                                        gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt                                                                                           <  1:1017920/72‑1 (MQ=255)                                                                                                                                        gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt                                                                                           >  2:1017920/1‑72 (MQ=255)                                                                                                                                            gctgctGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagctt         <  1:157333‑M2/150‑109 (MQ=255)                                                                                                                                             ctgctgACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttc        <  1:80136‑M2/150‑110 (MQ=255)                                                                                                                                                 tgACGCGGGCCGGGCGCTGCTGGCCGCCCCTATCGGACGTCTGCAGGTCGCCCGGCTGCAGTTTCTTGCTCCTGCACAGTTGCGCCTCCGCCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCa    <  1:255287/150‑1 (MQ=255)                                                                                                                                                  gACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttctacct   >  2:80136‑M2/1‑36 (MQ=255)                                                                                                                                                   aCGttcgatattggcggccagcagcgccaggcccgcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttctacctg  <  2:402495‑M1/150‑148 (MQ=255)                                                                                                                                                   aCGttcgatattggcggccagcagcgccaggcccgcatcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttctacctg  >  1:293700‑M1/1‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACAGCGCGACGACATCCAGGTCATGCCCCGGTGCCAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGC  >  NC_002947/2645316‑2645611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.