New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2645464	27 (0.620)	3 (0.070)	3/236	NT	10.2%	coding (1893/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2645496	28 (0.700)					coding (1861/2499 nt)	PP_2316	ABC transporter permease

CAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTCGGC  >  NC_002947/2645350‑2645634                                                                                                                                                   |                                                                                                                                           cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGATGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt                                                                                                                                         >  1:293700‑M2/1‑147 (MQ=255) cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt                                                                                                                                         <  2:402495‑M2/150‑4 (MQ=255)         aGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGt                                                                                                                                 <  1:402495/150‑1 (MQ=255)                cAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCAt                                                                                                                          <  2:598592/150‑1 (MQ=255)                  ggTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCt                                                                                                                        <  1:998230/150‑1 (MQ=255)                            cGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAg                                                                                                              <  1:279133/150‑1 (MQ=255)                             ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAgg                                                                                                             <  1:1033678/150‑1 (MQ=255)                             ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCCCCCATCTGCAGTTTCAgg                                                                                                             >  2:264083/1‑150 (MQ=255)                                      tGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGcc                                                                                                    >  1:476656/1‑150 (MQ=255)                                          gCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGCCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGtt                                                                                                >  2:463525/1‑150 (MQ=255)                                              gCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGACCCGttacac                                                                                            <  2:884476/150‑5 (MQ=255)                                                       gAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCCCCGa                                                                                   >  2:255287/1‑150 (MQ=255)                                                                gTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCggg                                                                          <  1:600392/150‑1 (MQ=255)                                                                 aaGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCgggg                                                                         >  1:1007364/2‑150 (MQ=255)                                                                               gAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGGTCCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGc                                                           <  1:67366/150‑1 (MQ=255)                                                                                aaGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCt                                                          <  1:45747/150‑1 (MQ=255)                                                                                    tGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCACGGGGATATCGTTGTCGGCTGGCa                                                      <  2:272159/150‑1 (MQ=255)                                                                                        ccAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCAAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGc                                                  >  1:691272/1‑150 (MQ=255)                                                                                               aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac                                           <  2:476656/150‑1 (MQ=255)                                                                                               aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac                                           >  1:339464/1‑150 (MQ=255)                                                                                                      gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt                                                                                                                  >  2:1017920/1‑72 (MQ=255)                                                                                                      gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt                                                                                                                  <  1:1017920/72‑1 (MQ=255)                                                                                                          gctgctGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagctt                                <  1:157333‑M2/150‑109 (MQ=255)                                                                                                           ctgctgACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttc                               <  1:80136‑M2/150‑110 (MQ=255)                                                                                                               tgACGCGGGCCGGGCGCTGCTGGCCGCCCCTATCGGACGTCTGCAGGTCGCCCGGCTGCAGTTTCTTGCTCCTGCACAGTTGCGCCTCCGCCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCa                           <  1:255287/150‑1 (MQ=255)                                                                                                                gACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttctacct                          >  2:80136‑M2/1‑36 (MQ=255)                                                                                                                     gggCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGt                     <  2:691272/150‑1 (MQ=255)                                                                                                                            gcgcTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGtt                                                                 >  1:547719/1‑99 (MQ=255)                                                                                                                            gcgcTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGtt                                                                 <  2:547719/99‑1 (MQ=255)                                                                                                                              gctgctGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCgg            <  2:28185/150‑1 (MQ=255)                                                                                                                                tgctgGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCAGCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGc          >  1:521153/1‑150 (MQ=255)                                                                                                                                tgctgGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGc          >  2:21971/1‑150 (MQ=255)                                                                                                                                       cgccAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTcgg   >  1:224235/1‑150 (MQ=255)                                                                                                                                        gccAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTcggc  >  2:959314/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                           CAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTCGGC  >  NC_002947/2645350‑2645634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.