New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3426005 =	38 (0.880)	3 (0.070)	3/244	NT	7.1%	coding (527/612 nt)	PP_3041	hypothetical protein
	?	NC_002947	3426046 =	42 (1.010)					coding (568/612 nt)	PP_3041	hypothetical protein

CGATCGTGCCGCAGTCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTG  >  NC_002947/3425859‑3426154                                                                                                                                                   |                                                                                                                                                      cGATCGTGCCGCAGTCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCg                                                                                                                                                    <  1:286887/150‑1 (MQ=255)       tGCCGCAGTCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGtt                                                                                                                                              <  1:886127/150‑1 (MQ=255)       tGCCGCAGTCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGtt                                                                                                                                              >  2:886127/1‑150 (MQ=255)               tCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAg                                                                                                                                      >  1:223586/1‑150 (MQ=255)                cGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACTTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGc                                                                                                                                     <  1:606226/150‑1 (MQ=255)                   aGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTc                                                                                                                                  <  1:1058418/150‑1 (MQ=255)                       gccgcGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGc                                                                                                                              >  2:355514/1‑150 (MQ=255)                       gccgcGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGc                                                                                                                              >  1:771387/1‑150 (MQ=255)                                  tgctgGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTc                                                                                                                   >  2:327529/1‑150 (MQ=255)                                     tcagccctcggcaaaacgcttcgcggtacacctctgcaccgtttgcgtatccggtgggcataggctcagctctgtttagtggattgtttctggccaatggcctgttcaagGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGa                                                                                                                >  2:1054264‑M1/111‑150 (MQ=255)                                      cagccctcggcaaaacgcttcgcggtacacctctgcaccgtttgcgtatccggtgggcataggctcagctctgtttagtggattgtttctggccaatggcctgttcaagGTCg                                                                                                                                                    <  2:508965‑M1/4‑1 (MQ=255)                                      cagccctcggcaaaacgcttcgcggtacacctctgcaccgtttgcgtatccggtgggcataggctcagctctgtttagtggattgtttctggccaatggcctgttcaagGTCg                                                                                                                                                    >  1:508965‑M1/110‑113 (MQ=255)                                           gaTGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGtt                                                                                                                                              <  2:125507/114‑1 (MQ=255)                                           gaTGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGtt                                                                                                                                              >  1:125507/1‑114 (MQ=255)                                            aTGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGaa                                                                                                         <  1:1087001/150‑1 (MQ=255)                                              gCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGCCCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCTACCTTGAACa                                                                                                       >  2:481645/1‑150 (MQ=255)                                                ttCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAgg                                                                                                     <  1:60631/150‑1 (MQ=255)                                                      aGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTg                                                                                               <  1:418706/150‑1 (MQ=255)                                                        cAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACCGCTCCGTCCTTGAACAGGCCATTGGc                                                                                             <  2:542634/150‑1 (MQ=255)                                                               tCGGCCTGGCTCCGCAGCTAGCTGGCGGAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAAc                                                                                      <  1:935543/150‑1 (MQ=255)                                                                   ccTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATc                                                                                  <  1:355514/150‑1 (MQ=255)                                                                     tGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCa                                                                                <  2:288929/150‑1 (MQ=255)                                                                       gCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAACCAATACACt                                                                              >  1:501376/1‑150 (MQ=255)                                                                         tCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTaa                                                                            >  2:914573/1‑150 (MQ=255)                                                                         tCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTaa                                                                            >  1:632103/1‑150 (MQ=255)                                                                               gctagctGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACagag                                                                      <  2:223586/150‑1 (MQ=255)                                                                                   gctGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATc                                                                                  <  1:902589/134‑1 (MQ=255)                                                                                   gctGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATc                                                                                  >  2:902589/1‑134 (MQ=255)                                                                                     atccggtgggcataggctcagctctgtttagtggattgtttctggccaatggcctgttcaagGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGAcc                                                                                                              <  2:222397‑M1/42‑1 (MQ=255)                                                                                     atccggtgggcataggctcagctctgtttagtggattgtttctggccaatggcctgttcaagGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGAcc                                                                                                              >  1:222397‑M1/63‑104 (MQ=255)                                                                                                              cTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACgg                                       >  2:1056385/1‑150 (MQ=255)                                                                                                                 tgGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGc                                    >  1:209424/1‑150 (MQ=255)                                                                                                                    gAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGa                                                  >  1:629084/1‑133 (MQ=255)                                                                                                                    gAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGa                                                  <  2:629084/133‑1 (MQ=255)                                                                                                                          gagaGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCCACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTa                           <  1:230588/150‑1 (MQ=255)                                                                                                                               gCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCAc                                                      <  2:180837/118‑1 (MQ=255)                                                                                                                               gCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCAc                                                      >  1:180837/1‑118 (MQ=255)                                                                                                                                 aCCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAcaca                                                                         >  2:68376/1‑97 (MQ=255)                                                                                                                                 aCCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACa                                                                         <  1:68376/97‑1 (MQ=255)                                                                                                                                  ccTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATc                                                                                  <  2:1057610/87‑1 (MQ=255)                                                                                                                                  ccTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATc                                                                                  >  1:1057610/1‑87 (MQ=255)                                                                                                                                   cTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCAATAAACAGAGATGAGCATATGCAAACCGAATACTCAAACGGTGCAGAGGTGTACCGCGAAGc                  >  2:121713/1‑150 (MQ=255)                                                                                                                                    tCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCg                 >  1:89988/1‑150 (MQ=255)                                                                                                                                            acTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCg         >  1:48701/1‑150 (MQ=255)                                                                                                                                              tttCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAg       <  2:771387/150‑1 (MQ=255)                                                                                                                                                   GTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTg  <  2:433735‑M1/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGATCGTGCCGCAGTCGAAGACGCCGCGTTCGCTGCTGGGAGGATGCTTCGCGAGCAGTTTTTCGGCCTGGCTCCGCAGCTAGCTGGCGAAGTAGTCGGGATGAGCGACCTGTGGGAAGTCGAGAGGCACCTCACTGACACTTTCCGTCGGGTGTTCACCGAAGCCTCCAGCATGAACAGCTCCGACCTTGAACAGGCCATTGGCCAGAAACAATCCACTAAACAGAGCTGAGCCTATGCCCACCGGATACGCAAACGGTGCAGAGGTGTACCGCGAAGCGTTTTGCCGAGGGCTG  >  NC_002947/3425859‑3426154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.