New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3427898	49 (1.130)	4 (0.100)	4/244	NT	8.2%	coding (1804/2037 nt)	PP_3042	terminase large subunit
	?	NC_002947	= 3427919	43 (1.030)					coding (1825/2037 nt)	PP_3042	terminase large subunit

CGTCCGCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCGGCCCGCTCCA  >  NC_002947/3427759‑3428047                                                                                                                                            |                                                                                                                                                      cgtcCGCTACGTGAAGGGGCACGAACGGTTCGTATTAATCTTTTTGTATGTCTAGCGCAACGAGGCGCTGGCCCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCg                                                                                                                                             <  1:804853/150‑1 (MQ=255)    ccGCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCAGGGCTTACTGCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCa                                                                                                                                          <  1:437625/150‑1 (MQ=255)      gCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAgg                                                                                                                                        >  1:1121187/1‑150 (MQ=255)      gCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAgg                                                                                                                                        <  1:908886/150‑1 (MQ=255)      gCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAgg                                                                                                                                        >  2:1870/1‑150 (MQ=255)        tACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGgcg                                                                                                                                      >  1:846892/1‑150 (MQ=255)               aGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGccc                                                                                                                               >  2:1121187‑M2/1‑147 (MQ=255)                 gggCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGcccag                                                                                                                             <  1:495427‑M2/150‑6 (MQ=255)                   gCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGc                                                                                                                           >  2:983976/1‑150 (MQ=255)                     aCGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGa                                                                                                                         <  2:1095013/150‑1 (MQ=255)                           ggTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGGGGCGCTGGGCCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGt                                                                                                                   <  2:910310/150‑1 (MQ=255)                           ggTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGt                                                                                                                   <  1:983976/150‑1 (MQ=255)                                     ggTCAAGATCAAGGCCGAGCGCAACGAGGCGCTGTACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGcc                                                                                                         <  2:518315/150‑1 (MQ=255)                                     ggTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGcc                                                                                                         <  2:947901/150‑1 (MQ=255)                                      gTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCg                                                                                                        >  1:508181/1‑150 (MQ=255)                                       tCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGt                                                                                                       >  1:476850/1‑150 (MQ=255)                                       tCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGt                                                                                                       >  1:1016797/1‑150 (MQ=255)                                       tCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCGGAACTGGCCCGAAGTCAGCATATTCCTTAAGCTGCGGCAGGCGCTGGCCCAGGCGAGGCTGTTtgatgatcggt                                                                                                       >  1:976187/1‑145 (MQ=255)                                         aaGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGcc                                                                                                         <  2:1042069/146‑1 (MQ=255)                                         aaGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGcc                                                                                                         >  1:1042069/1‑146 (MQ=255)                                                aGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGa                                                                                              >  1:1041696/1‑150 (MQ=255)                                                      aGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAAc                                                                                        <  2:846892/150‑1 (MQ=255)                                                      aGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAAc                                                                                        <  2:476850/150‑1 (MQ=255)                                                       gcgcAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAAcc                                                                                       <  2:495427/150‑1 (MQ=255)                                                           aaCGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGCCTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTc                                                                                   <  2:999735/150‑1 (MQ=255)                                                              gAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGccagcgcctgccgcagcttgtcccagtcgtgttcgccata                                                                                                               >  2:945083‑M1/1‑79 (MQ=255)                                                              gAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGccagcgcctgccgcagcttgtcccagtcgtgttcgccata                                                                                                               <  1:945083‑M1/119‑41 (MQ=255)                                                                   gcTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGcc                                                                           >  2:385564/1‑149 (MQ=255)                                                                    cTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCAc                                                                          <  1:532131/150‑1 (MQ=255)                                                                          cTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGccagcgcctgccgcagcttgtcccagtcgt                                                                                                                         <  1:822555‑M1/97‑31 (MQ=255)                                                                          cTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGccagcgcctgccgcagcttgtcccagtcgt                                                                                                                         >  2:822555‑M1/1‑67 (MQ=255)                                                                           tCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACg                                                                   >  2:221858/1‑150 (MQ=255)                                                                           tCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGACGGCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACg                                                                   >  1:232545/1‑150 (MQ=255)                                                                            cATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGa                                                                  <  2:508181/150‑1 (MQ=255)                                                                             aTGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGAt                                                                 <  2:976187/150‑1 (MQ=255)                                                                                     cAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTtga                                                                                                               >  1:486829/1‑96 (MQ=255)                                                                                     cAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTtga                                                                                                               <  2:486829/96‑1 (MQ=255)                                                                                     cAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGAcgacga                                                         <  1:90079/150‑1 (MQ=255)                                                                                      aaCCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGa                                                                              >  1:220300/1‑128 (MQ=255)                                                                                      aaCCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGa                                                                              <  2:220300/128‑1 (MQ=255)                                                                                       aCCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTcc                                                                                                   <  2:557917/106‑1 (MQ=255)                                                                                       aCCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTcc                                                                                                   >  1:557917/1‑106 (MQ=255)                                                                                       aCCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATg                                                       >  2:1020841/1‑150 (MQ=255)                                                                                         cTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCAc                                                                          >  2:389360/1‑129 (MQ=255)                                                                                         cTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCAc                                                                          <  1:389360/129‑1 (MQ=255)                                                                                           ggCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGAccc                                                   <  1:1870/150‑1 (MQ=255)                                                                                               aTGGCTTAATTCCTCGGGCTGCACCGGTAAGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGAGCAGGCGAGTCTGTCTGATGAGCCGTCTCCTGCGAAGCAACCGGTAGTTGAGCACCAACACGAGGACGACGATGACACGgac                                               >  2:32337/1‑150 (MQ=255)                                                                                                   cTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGacgacg                                           >  1:815783/1‑150 (MQ=255)                                                                                                        ttCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCa                                      >  1:429487/1‑150 (MQ=255)                                                                                                        ttCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCa                                      <  1:221858/150‑1 (MQ=255)                                                                                                         tCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAg                                     <  2:1041696/150‑1 (MQ=255)                                                                                                                          tATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgaggtccagcgcctc                                                   <  1:945083‑M2/119‑80 (MQ=255)                                                                                                                          tATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgaggtccagcgcctc                                                   >  2:945083‑M2/1‑40 (MQ=255)                                                                                                                                gAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCt              >  1:643923/1‑150 (MQ=255)                                                                                                                                   cacGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCgg           <  1:573099/150‑1 (MQ=255)                                                                                                                                    acGACTGGGACAAGCTGCGGCAGGCGCTGGcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgag                                                               <  1:822555‑M2/97‑68 (MQ=255)                                                                                                                                    acGACTGGGACAAGCTGCGGCAGGCGCTGGcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgag                                                               >  2:822555‑M2/1‑30 (MQ=255)                                                                                                                                    acGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCGGc          <  2:815783/150‑1 (MQ=255)                                                                                                                                      gACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCGGccc        >  1:276807/1‑150 (MQ=255)                                                                                                                                        cTGGGccagcgcctgccgcagcttgtcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgaggtccagcgcctcgttgcgctcggccttgctcttgacccattcgaaccgttcgtgccc      <  1:495427‑M1/150‑146 (MQ=255)                                                                                                                                          gggccagcgcctgccgcagcttgtcccagtcgtgttcgccataccggtgcagcccgaggaagtaagccatggccaggttgtacaccatgaggtccagcgcctcgttgcgctcggccttgctcttgacccattcgaaccgttcgtgcccct    >  2:1121187‑M1/1‑3 (MQ=255)                                                                                                                                            gACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCGGCCcgctcca  >  1:739472/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                      CGTCCGCTACGTGAAGGGGCACGAACGGTTCGAATGGGTCAAGAGCAAGGCCGAGCGCAACGAGGCGCTGGACCTCATGGTGTACAACCTGGCCATGGCTTACTTCCTCGGGCTGCACCGGTATGGCGAACACGACTGGGACAAGCTGCGGCAGGCGCTGGCCCAGGCGAGTCTGTTTGATGAGCCGTCTCCTGCGAAGCAACCGGTCGTTGAGCACCAACACGATGACGACGATGACCCGGACGACGATCCAGTTTCACCGCCAACACCACCGGCTCGGCCCGCTCCA  >  NC_002947/3427759‑3428047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.