New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5046227 =	32 (0.740)	3 (0.070)	3/242	NT	8.2%	coding (137/627 nt)	PP_4450	phosphoglycerate mutase family protein
	?	NC_002947	5046271 =	37 (0.900)					coding (181/627 nt)	PP_4450	phosphoglycerate mutase family protein

CGATAGTCGATGAAACGAATAAAGCTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAG  >  NC_002947/5046082‑5046373                                                                                                                                                  |                                                                                                                                                   cGATAGTCGATGAAACGAATAAAGCTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCt                                                                                                                                                >  2:1093724/1‑150 (MQ=255)  tctcgcccaatacgcatccacccaatcccgtcgttgagcgactgtggtatcgacgcaacgcgcgggtgcgaggtaagtgaactcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTg                                                                                                                                               <  1:925597‑M1/6‑1 (MQ=255)        ccaatacgcatccacccaatcccgtcgttgagcgactgtggtatcgacgcaacgcgcgggtgcgaggtaagtgaactcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTg                                                                                                                                               >  2:734084‑M1/139‑144 (MQ=255)        ccaatacgcatccacccaatcccgtcgttgagcgactgtggtatcgacgcaacgcgcgggtgcgaggtaagtgaactcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTg                                                                                                                                               <  1:734084‑M1/6‑1 (MQ=255)              aaCGAATAAAGCTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTgg                                                                                                                                   <  2:483109/150‑1 (MQ=255)               aCGAATAAAGCTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGc                                                                                                                                  >  1:735369/1‑150 (MQ=255)                  aaTAAAGGTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTc                                                                                                                               <  2:530811/150‑1 (MQ=255)                         cTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTtc                                                                                                                        <  1:489323/150‑1 (MQ=255)                                 tCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGc                                                                                                                >  2:569720/1‑150 (MQ=255)                                    cGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCa                                                                                                             <  2:837445/150‑1 (MQ=255)                                     ggCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAg                                                                                                            <  1:1093724/150‑1 (MQ=255)                                     ggCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGCGCCCAg                                                                                                            <  1:107241/150‑1 (MQ=255)                                       cGAGAGTGCTGCCAACGCAGGCCAGCCGAGTCGAAATCATGAAAGCATCCCTTTGACCAATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGc                                                                                                          <  2:17252/150‑1 (MQ=255)                                         agagTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTTATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGa                                                                                                        <  1:600579/150‑1 (MQ=255)                                            tgtggtatcgacgcaacgcgcgggtgcgaggtaagtgaactcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAg                                                                                                     >  1:1088105‑M1/103‑150 (MQ=255)                                                   cAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCCCCTTTCTCACGGGCCCAGGCGACAGCACAGga                                                                                              <  1:752650/150‑1 (MQ=255)                                                   cAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGga                                                                                              <  1:437357/150‑1 (MQ=255)                                                                gcGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGACGACCGCAAAGGCGATAACCGCCCTc                                                                                 >  2:904956/1‑150 (MQ=255)                                                                       gAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTc                                                                              <  1:188656/146‑1 (MQ=255)                                                                       gAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTc                                                                              >  2:188656/1‑146 (MQ=255)                                                                          aTCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGa                                                                                                                                              >  2:221424/1‑79 (MQ=255)                                                                          aTCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGa                                                                                                                                              <  1:221424/79‑1 (MQ=255)                                                                             aTGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTgg                                                                    <  1:701933/150‑1 (MQ=255)                                                                                    tcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAgg                                                                                                           <  1:517924‑M1/42‑1 (MQ=255)                                                                                    tcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAgg                                                                                                           >  2:517924‑M1/63‑104 (MQ=255)                                                                                    cATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTga                                                             <  2:735369/150‑1 (MQ=255)                                                                                     aTCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgag                                                            >  1:856201/1‑150 (MQ=255)                                                                                            tGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGATAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGc                                                     <  2:1017756/150‑1 (MQ=255)                                                                                              aCCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCa                                                   >  2:80012/1‑150 (MQ=255)                                                                                                ccATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAAt                                                 >  2:105385/1‑150 (MQ=255)                                                                                                ccATCGAGGACTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgaga                                                           >  1:818810/1‑140 (MQ=255)                                                                                                ccATCGAGGACTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgaga                                                           <  2:818810/140‑1 (MQ=255)                                                                                                    cGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCTTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGCCATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCaa                                             <  2:573445/150‑1 (MQ=255)                                                                                                     gAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTGTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAag                                            >  2:955442/1‑150 (MQ=255)                                                                                                      aGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAaga                                           <  1:882177/150‑1 (MQ=255)                                                                                                           tCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCa                                      >  2:755977/1‑150 (MQ=255)                                                                                                                       tCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCAc                          >  2:104350/1‑150 (MQ=255)                                                                                                                                cAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGtt                 >  2:757811/1‑150 (MQ=255)                                                                                                                                       tttCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGa          <  1:105385/150‑1 (MQ=255)                                                                                                                                               aaGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAg  <  1:904956/150‑1 (MQ=255)                                                                                                                                               aaGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGAGCGTTGCGTCGCTACCACAg  <  2:856201/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CGATAGTCGATGAAACGAATAAAGCTGGTTCGTCACGGCGAGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATGGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAG  >  NC_002947/5046082‑5046373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.