| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5046227 = | 32 (0.740) | 3 (0.070) | 3/242 | NT | 8.2% | coding (137/627 nt) | PP_4450 | phosphoglycerate mutase family protein |
| ? | NC_002947 | 5046271 = | 37 (0.900) | coding (181/627 nt) | PP_4450 | phosphoglycerate mutase family protein | |||||
AGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTGGGCGAGA > NC_002947/5046122‑5046414 | agagTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTTATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGa < 1:600579/150‑1 (MQ=255) tgtggtatcgacgcaacgcgcgggtgcgaggtaagtgaactcttggattggccatgtctcaatcgccacggtggggaagatggcggatgtctcctgtgctgtCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAg > 1:1088105‑M1/103‑150 (MQ=255) cAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCCCCTTTCTCACGGGCCCAGGCGACAGCACAGga < 1:752650/150‑1 (MQ=255) cAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGga < 1:437357/150‑1 (MQ=255) gcGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGACGACCGCAAAGGCGATAACCGCCCTc > 2:904956/1‑150 (MQ=255) gAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTc < 1:188656/146‑1 (MQ=255) gAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTc > 2:188656/1‑146 (MQ=255) aTGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTgg < 1:701933/150‑1 (MQ=255) cATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTga < 2:735369/150‑1 (MQ=255) aTCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgag > 1:856201/1‑150 (MQ=255) tGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGATAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑Gc < 2:1017756/150‑1 (MQ=255) aCCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCa > 2:80012/1‑150 (MQ=255) ccATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAAt > 2:105385/1‑150 (MQ=255) ccATCGAGGACTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgaga < 2:818810/140‑1 (MQ=255) ccATCGAGGACTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTgaga > 1:818810/1‑140 (MQ=255) cGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCTTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGCCATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCaa < 2:573445/150‑1 (MQ=255) gAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTGTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAag > 2:955442/1‑150 (MQ=255) aGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAaga < 1:882177/150‑1 (MQ=255) tCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCa > 2:755977/1‑150 (MQ=255) tCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCAc > 2:104350/1‑150 (MQ=255) cAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGtt > 2:757811/1‑150 (MQ=255) tttCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGa < 1:105385/150‑1 (MQ=255) ctgtcgcctgggcccgtgagaaaggtgaagccacgatgagctcaggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACcaca > 1:1088105‑M2/49‑150 (MQ=255) aaGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAg < 1:904956/150‑1 (MQ=255) aaGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGAGCGTTGCGTCGCTACCACAg < 2:856201/150‑1 (MQ=255) GCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGc < 1:444900‑M1/150‑1 (MQ=255) cctgggcccgtgagaaaggtgaagccacgatgagctcaggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAaga > 2:517924‑M2/43‑104 (MQ=255) cctgggcccgtgagaaaggtgaagccacgatgagctcaggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAaga < 1:517924‑M2/62‑1 (MQ=255) CTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTc < 1:245542‑M1/150‑1 (MQ=255) gCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAacg > 2:492632/1‑150 (MQ=255) tCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACggg > 1:600859/1‑150 (MQ=255) cGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGa < 1:755977/150‑1 (MQ=255) gTGGCTTCACCTTTCTCACAGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCATTCATGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGAt > 1:851585/1‑150 (MQ=255) gCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCaa < 1:600811/87‑1 (MQ=255) gCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCaa > 2:600811/1‑87 (MQ=255) ttCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGt > 2:126427/1‑150 (MQ=255) ttCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGt > 1:38904/1‑150 (MQ=255) tCACCTTTCTCACGGGCACAGGAGACAGGACAGGAGACATCCGCCATCTTCCCCCCCGT‑CTTAATCCGATCTGCGCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTg < 1:569720/150‑1 (MQ=255) cACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCAGCGTGGCGATTGAGACATG‑GCAAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTgg > 1:72159/1‑150 (MQ=255) ccTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGAt > 1:319782/1‑150 (MQ=255) tcACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTAt < 1:905120/150‑1 (MQ=255) aCGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAac > 2:90855/1‑125 (MQ=255) aCGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAac < 1:90855/125‑1 (MQ=255) cGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTgg < 1:80012/150‑1 (MQ=255) gCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTGGGCg > 2:925597/1‑150 (MQ=255) ccAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTGGGCgag > 2:196498/1‑150 (MQ=255) caggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTgg > 2:734084‑M2/7‑144 (MQ=255) caggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTgg < 1:734084‑M2/138‑1 (MQ=255) caggcgACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTGGGCgaga < 1:925597‑M2/144‑1 (MQ=255) | AGAGTGCTGCCAACGCAGGCCAGGCGAGTCGAAATCATGAAAGCATCCCTTTGACCCATCGAGGGCTCGAGCAGGCAATCACCGTGGCAAGGTCTTTCACTAAAGCGCCTGAGCTCATCGTGGCTTCACCTTTCTCACGGGCCCAGGCGACAGCACAGGAGACATCCGCCATCTTCCCCACCGTGGCGATTGAGACATG‑GCCAATCCAAGAGTTCACTTACCTCGCACCCGCGCGTTGCGTCGATACCACAGTCGCTCAACGACGGGATTGGGTGGATGCGTATTGGGCGAGA > NC_002947/5046122‑5046414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |