New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5418129	34 (0.780)	3 (0.070)	3/238	NT	8.2%	coding (990/1368 nt)	PP_4758	MFS transporter
	?	NC_002947	= 5418145	35 (0.860)					coding (974/1368 nt)	PP_4758	MFS transporter

GGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGTCGCCCATACGCTTGATGATGCTGG  >  NC_002947/5417987‑5418277                                                                                                                                               |                                                                                                                                                     gggCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGTACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCgg                                                                                                                                               >  1:356603/1‑150 (MQ=255)            tAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGcc                                                                                                                                    <  2:394785‑M2/150‑3 (MQ=255)               cgcggggtgagtgGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGcctgc                                                                                                                                 >  2:737850‑M2/5‑145 (MQ=255)               cccTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGTCACACAGGcctgc                                                                                                                                 <  1:785224‑M2/150‑6 (MQ=255)                ccTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGcctgct                                                                                                                                >  2:267341‑M2/1‑144 (MQ=255)                    ggggATTGGGCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGaa                                                                                                                            <  1:954169/150‑1 (MQ=255)                    ggggATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGaa                                                                                                                            <  2:748530/150‑1 (MQ=255)                        aTTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGcctgggtggccggcgccctgctggtcgctg                                                                                                                        <  2:107507‑M1/150‑31 (MQ=255)                            gCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGCACTTCCagg                                                                                                                    >  2:114878/1‑149 (MQ=255)                            gCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCagc                                                                                                                    >  2:466929/1‑150 (MQ=255)                                     gTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAAc                                                                                                           >  1:163608/1‑150 (MQ=255)                                                gACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAg                                                                                                <  2:898991/150‑1 (MQ=255)                                                   ttGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCg                                                                                             >  1:1116895/1‑150 (MQ=255)                                                   ttGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGACTAAGGCg                                                                                             >  1:597137/1‑150 (MQ=255)                                                    tGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGt                                                                                            <  1:394785/150‑1 (MQ=255)                                                    tGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGt                                                                                            <  1:391694/150‑1 (MQ=255)                                                           gATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGcctgggtggccggcgccctgctgg                                                                                                                              <  1:547636‑M1/109‑25 (MQ=255)                                                           gATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGcctgggtggccggcgccctgctgg                                                                                                                              >  2:547636‑M1/1‑85 (MQ=255)                                                              cgcgGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAg                                                                                  <  1:814037/150‑1 (MQ=255)                                                                cggcgAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGa                                                                                <  1:556706/150‑1 (MQ=255)                                                                       gCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGAt                                                                         <  2:163608/150‑1 (MQ=255)                                                                              gCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCaa                                                                  <  2:356603/150‑1 (MQ=255)                                                                                    aaGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAAGTTCCag                                                                                                                     >  1:49301/1‑93 (MQ=255)                                                                                    aaGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAAGTTCCag                                                                                                                     <  2:49301/93‑1 (MQ=255)                                                                                     aGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCg                                                           <  1:894974/150‑1 (MQ=255)                                                                                       gCAAACACCGCCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAg                                                         <  1:498801/150‑1 (MQ=255)                                                                                         aaaCACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAgg                                                                                                                                      >  1:772736/1‑71 (MQ=255)                                                                                         aaaCACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAgg                                                                                                                                      <  2:772736/71‑1 (MQ=255)                                                                                            cacCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGTCAGCCAATGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTgaa                                                    <  1:757915/150‑1 (MQ=255)                                                                                                                 cATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTACTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACt                               <  2:225079/150‑1 (MQ=255)                                                                                                                    gAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAg                            >  2:1012495/1‑150 (MQ=255)                                                                                                                     aaCATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAAc                                               <  2:863854/130‑1 (MQ=255)                                                                                                                     aaCATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAAc                                               >  1:863854/1‑130 (MQ=255)                                                                                                                      aCATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGt                          >  2:138978/1‑150 (MQ=255)                                                                                                                        aTGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGTCg                        >  1:104754/1‑150 (MQ=255)                                                                                                                            ccGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCa                                                                       >  1:1079930/1‑99 (MQ=255)                                                                                                                            ccGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCa                                                                       <  2:1079930/99‑1 (MQ=255)                                                                                                                            ccGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCAt                                     <  2:699817/133‑1 (MQ=255)                                                                                                                            ccGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCAt                                     >  1:699817/1‑133 (MQ=255)                                                                                                                              gTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGTCGCCCATa                  <  2:1116895/150‑1 (MQ=255)                                                                                                                                  cAGCGACCAGCAGGGCGCCGGCCACCCAGGcctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccaat              <  2:107507‑M2/150‑121 (MQ=255)                                                                                                                                   aGCGACCAGCAGGGCGCCGGACACCCAGGCCTGCTGGAACTTCCCGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGAGCAGCCAAGGGATCGAGTTGAAGAACCCGACCTGCATGTCACTGAGGTCGCCCATACGCtt             <  2:1005484/150‑1 (MQ=255)                                                                                                                                        ccAGCAGGGCGCCGGCCACCCAGGcctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatc                                                 >  2:547636‑M2/1‑24 (MQ=255)                                                                                                                                        ccAGCAGGGCGCCGGCCACCCAGGcctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatc                                                 <  1:547636‑M2/109‑86 (MQ=255)                                                                                                                                          agcagGcctgggtggccggcgccctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccaatcccccagg      >  2:267341‑M1/1‑6 (MQ=255)                                                                                                                                           gcagGcctgtgtgaccggcgccctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccaatcccccaggg     <  1:785224‑M1/150‑146 (MQ=255)                                                                                                                                           gcagGcctgggtggccggcgccctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccactcaccccgcg     >  2:737850‑M1/1‑5 (MQ=255)                                                                                                                                            cagGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGTCGCCCATACGCTTGATGATGCt    <  2:968704/150‑1 (MQ=255)                                                                                                                                              ggcctgggtggccggcgccctgctggtcgctgccacgggcatgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccaatcccccagggcta  <  2:394785‑M1/150‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCATGTCACTGAGGTCGCCCATACGCTTGATGATGCTGG  >  NC_002947/5417987‑5418277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.