New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 110027	63 (1.200)	7 (0.140)	5/236	NT	10.0%	coding (47/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 110047	65 (1.290)					coding (67/1590 nt)	ctaD	cytochrome c oxidase subunit 1

AACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/109875‑110027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaTCAGGCCCTTGGCCGGGCCGTGCGCATGGTC  <  NC_002947/110047‑110017                                                                                                                                                                                          AACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGC                                    >  1:1318817/1‑150  ACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCG                                   >  1:1136504/1‑150   CAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGC                                  >  1:1304442/1‑150                         AAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCA‑C‑GGCCCTTGGCCGGGCCGTGC          <  2:326112/150‑1                                                 GCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCATCAGGCCCTTGGCCGGGCCGTGCGCATGGTC  >  1:32064/1‑136                                                 GCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCATCAGGCCCTTGGCCGGGCCGTGCGCATGGTC  <  2:32064/136‑1                                                                                     AATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCATCAGGCCCTTGGCCGGGCCGTGCGCATG     <  1:1023026/97‑1                                                                                     AATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCATCAGGCCCTTGGCCGGGCCGTGCGCATG     >  2:1023026/1‑97                                                                                     AATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCA‑C‑GGCCCTTGGCCGGGCCGTGC          <  1:443507/90‑1                                                                                     AATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCA‑C‑GGCCCTTGGCCGGGCCGTGC          >  2:443507/1‑90                                                                                                                                                                                          AACAAAGGCGACATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/109875‑110027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaTCAGGCCCTTGGCCGGGCCGTGCGCATGGTC  <  NC_002947/110047‑110017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.