New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 110027	63 (1.200)	7 (0.140)	5/236	NT	10.0%	coding (47/1590 nt)	ctaD	cytochrome c oxidase subunit 1
	?	NC_002947	= 110047	65 (1.290)					coding (67/1590 nt)	ctaD	cytochrome c oxidase subunit 1

ATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCTGAGCTGTTCCAGCCGGGTTT  >  NC_002947/109887‑110174                                                                                                                                             |                                                                                                                                                    aTGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATCGCAGGAGACAGGACATGCGTCAAGCGCCCAACAGCGACGCCCACGGCTACGACCATGCGCAcggcccggc                                                                                                                                            >  1:672688/1‑150 (MQ=255)      gACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAgg                                                                                                                                       <  2:1245599/150‑1 (MQ=255)             aaGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAcggcccttggccgggccgtgc                                                                                                                                <  2:326112‑M1/150‑22 (MQ=255)                   gTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTg                                                                                                                          >  2:1356415/1‑150 (MQ=255)                    tGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTgg                                                                                                                         <  2:1414503/150‑1 (MQ=255)                       tGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTg                                                                                                                      >  1:762828/1‑150 (MQ=255)                       tGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTg                                                                                                                      >  2:1343002/1‑150 (MQ=255)                         gcgcGGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCt                                                                                                                    <  2:640649/150‑1 (MQ=255)                            cTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGATCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGac                                                                                                                 <  1:685368/150‑1 (MQ=255)                                  caggcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCaccaa                                                                                                           <  1:151368/150‑1 (MQ=255)                                    ggcagAAGACAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCaccaacc                                                                                                         <  1:360534/150‑1 (MQ=255)                                     gcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAtcaggcccttggccgggccgtgcgcatggtc                                                                                                                      >  1:32064‑M1/1‑105 (MQ=255)                                     gcagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAtcaggcccttggccgggccgtgcgcatggtc                                                                                                                      <  2:32064‑M1/136‑32 (MQ=255)                                      cagAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGCTCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCAt                                                                                                       >  2:98499/1‑150 (MQ=255)                                        gAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATaa                                                                                                     >  1:520621/1‑150 (MQ=255)                                         aaGCCAAGTGAACCGGGTTCCTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATaaa                                                                                                    <  2:937716/150‑1 (MQ=255)                                         aaGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGTGCCTGATGCGCTGGGTGCTGACCACCAACCATaaa                                                                                                    <  1:287034/150‑1 (MQ=255)                                         aaGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATaaa                                                                                                    <  1:972229/150‑1 (MQ=255)                                                gTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCg                                                                                             <  2:1386729/150‑1 (MQ=255)                                                   aaCCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCa                                                                                          <  1:1343002/150‑1 (MQ=255)                                                   aaCCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAAGGCCCGTGTAAGGACCTAGTGTGTTTTTTGGTGACCACCAAGCATAAAGACCTCggaa                                                                                          >  2:589970/1‑148 (MQ=255)                                                      cGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCgtgccga                                                                                       <  1:721284/150‑7 (MQ=255)                                                      cGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGa                                                                                       >  1:1376652/1‑150 (MQ=255)                                                           tACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTAc                                                                                  <  2:762828/150‑1 (MQ=255)                                                              tCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGa                                                                                       <  1:536389/142‑1 (MQ=255)                                                              tCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGa                                                                                       >  2:536389/1‑142 (MQ=255)                                                               cgcgGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCtgt                                                                              <  2:1376652/150‑1 (MQ=255)                                                                gcgGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCAc                                                                                         <  2:973521/138‑1 (MQ=255)                                                                gcgGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCAc                                                                                         >  1:973521/1‑138 (MQ=255)                                                                cctgCAATCCATTGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGac                                                                                                                 >  2:992071/4‑114 (MQ=255)                                                                cctgCAATCCATTGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGac                                                                                                                 <  1:992071/111‑1 (MQ=255)                                                                   gCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGtt                                                                          <  2:110129/150‑1 (MQ=255)                                                                     aatcaatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCa                                                                        <  1:589970/150‑1 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAtcaggcccttggccgggccgtgcgcatg                                                                                                                         >  2:1023026‑M1/1‑69 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAtcaggcccttggccgggccgtgcgcatg                                                                                                                         <  1:1023026‑M1/97‑29 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAcggcccttggccgggccgtgc                                                                                                                                >  2:443507‑M1/1‑69 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCAcggcccttggccgggccgtgc                                                                                                                                <  1:443507‑M1/90‑22 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTAc                                                                                  <  1:631159/136‑1 (MQ=255)                                                                         aatGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTAc                                                                                  >  2:631159/1‑136 (MQ=255)                                                                          atGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTtc                                                                   >  2:1282542/1‑150 (MQ=255)                                                                          aggtatggCAGGAGCCTGGTCCTGAGTGCAGCGATTGACGGCCTCACCGATGGCGATGACCATGCGCAAGGCCCTGCCAAGGGCCTGGTGCGCTGGGTGCTGACCGCTGACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTtc                                                                   <  2:248173/143‑1 (MQ=255)                                                                               ttGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCATGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTcatcat                                                              >  2:92267/1‑150 (MQ=255)                                                                                 gCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGt                                                            <  2:1136504/150‑1 (MQ=255)                                                                                   aGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTc                                                          >  2:410854/1‑150 (MQ=255)                                                                                            gACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGt                                                 <  2:1318817/150‑1 (MQ=255)                                                                                              cATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCAc                                                                                         <  1:1418776/108‑1 (MQ=255)                                                                                              cATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCAc                                                                                         >  2:1418776/1‑108 (MQ=255)                                                                                               aTGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGa                                                                                       <  2:976611/109‑1 (MQ=255)                                                                                               aTGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGa                                                                                       >  1:976611/1‑109 (MQ=255)                                                                                               aTGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGc                                              >  2:33274/1‑150 (MQ=255)                                                                                                       aGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGc                                      <  1:1345812/150‑1 (MQ=255)                                                                                                           aTCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATg                                  <  1:410854/150‑1 (MQ=255)                                                                                                           aTCGACGACCACGCCCACGGCCACGACCATGCGAACGGCCCGGCCAAGGGCCAGAACCCCGGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATg                                  <  1:728238/150‑1 (MQ=255)                                                                                                            tCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATgg                                 <  2:816092/150‑1 (MQ=255)                                                                                                            tCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATgg                                 <  2:1245685/150‑1 (MQ=255)                                                                                                              gacgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTg                               >  1:314883/1‑150 (MQ=255)                                                                                                               acgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATg                                                                                     >  1:684464/1‑95 (MQ=255)                                                                                                               acgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATg                                                                                     <  2:684464/95‑1 (MQ=255)                                                                                                               acgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTc                                                          <  2:1067226/122‑1 (MQ=255)                                                                                                               acgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTc                                                          >  1:1067226/1‑122 (MQ=255)                                                                                                               acgacCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGa                              <  2:1304442/150‑1 (MQ=255)                                                                                                                     aCGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCcgcg                        >  2:435179/1‑150 (MQ=255)                                                                                                                       gCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCt                      >  2:989397/1‑150 (MQ=255)                                                                                                                         ccACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCGTGATGCGCTGGGTGCGGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCACCCTgg                    >  2:458564/1‑149 (MQ=255)                                                                                                                                cACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCTGAGCTGTTc             >  2:353432/1‑150 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCCGGCCAAGGGCCTGAtgcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccattgattgccgcgagtaacccggttcacttggcttctgc                        >  1:32064‑M2/1‑31 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCCGGCCAAGGGCCTGAtgcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccattgattgccgcgagtaacccggttcacttggcttctgc                        <  2:32064‑M2/136‑106 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGt                                                            >  1:1073655/1‑100 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGt                                                            <  2:1073655/100‑1 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCAGGCCAAGGGCCTGATGCGCTGGGTGc                                                                                                                     >  1:1348847/1‑43 (MQ=255)                                                                                                                                   gACCATGCGCACGGCCAGGCCAAGGGCCTGATGCGCTGGGTGc                                                                                                                     <  2:1348847/43‑1 (MQ=255)                                                                                                                                      cATGCGCACGGCCCGGCCAAGGGCCTGAtgcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccatt                                                            >  2:1023026‑M2/1‑28 (MQ=255)                                                                                                                                      cATGCGCACGGCCCGGCCAAGGGCCTGAtgcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccatt                                                            <  1:1023026‑M2/97‑70 (MQ=255)                                                                                                                                       aTGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCTGAGCTGTTCCAGCCgg      >  1:639014/1‑150 (MQ=255)                                                                                                                                           gcACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCTGAGCTGTTCCAGCCGGGttt  >  1:542052/1‑150 (MQ=255)                                                                                                                                           gcACGGCCCGGCCAAGGGCC‑Ggcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccattgattgccgcgagtaacccggttcacttggcttctgcctgcttcagcgccagcacgtcctt  <  2:326112‑M2/150‑129 (MQ=255)                                                                                                                                           gcACGGCCCGGCCAAGGGCC‑Ggcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccatt                                                              >  2:443507‑M2/1‑22 (MQ=255)                                                                                                                                           gcACGGCCCGGCCAAGGGCC‑Ggcgcatggtcgtggccgtgggcgtggtcgtcgatcactgcactcatgtcctgtctcctgcaatccatt                                                              <  1:443507‑M2/90‑69 (MQ=255)                                                                                                                                             |                                                                                                                                                    ATGGTGACGCCGAAGGACGTGCTGGCGCTGAAGCAGGCAGAAGCCAAGTGAACCGGGTTACTCGCGGCAATCAATGGATTGCAGGAGACAGGACATGAGTGCAGTGATCGACGACCACGCCCACGGCCACGACCATGCGCACGGCCCGGCCAAGGGCCTGATGCGCTGGGTGCTGACCACCAACCATAAAGACATCGGCACGATGTACCTGTGGTTCAGTTTCATCATGTTCCTGCTCGGTGGCTCGTTTGCCATGGTGATCCGCGCTGAGCTGTTCCAGCCGGGTTT  >  NC_002947/109887‑110174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.