New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 18992940 (0.760)3 (0.060) 3/230 NT 7.4% intergenic (+91/+66) PP_0165/PP_0166 GGDEF domain‑containing protein/HlyD family secretion protein
?NC_002947 = 189935 38 (0.770)intergenic (+97/+60) PP_0165/PP_0166 GGDEF domain‑containing protein/HlyD family secretion protein

TGCTGGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/189774‑189929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggctg‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGGCTCTAGCCCACGCCTACAGCGGCACGCGAGAGGCCATTCAGCGCCAAGGCGCAGGCTCACCCACCAGTTGC  <  NC_002947/189935‑189805
                                                                                                                                                                                                                                                                                                
TGCTGGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCA                                                                                                                                            <  1:1251160/150‑1
 GCTGGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAG                                                                                                                                           <  2:1139764/150‑1
 GCTGGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAG                                                                                                                                           <  2:906889/150‑1
    GGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGC                                                                                                                                        <  1:666037/150‑1
      AGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG                                                                                                                                      >  1:423887/1‑150
                                                                       TCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAG                                                                                                                                           <  1:1232482/80‑1
                                                                       TCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAG                                                                                                                                           >  2:1232482/1‑80
                                                                                                       CGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑TACAAGCAGCCCTG                                                                                                                       <  1:1332148/67‑1
                                                                                                       CGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑TACAAGCAGCCCTG                                                                                                                       >  2:1332148/1‑67
                                                                                                                              CCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTA‑CAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGGCTCTAGCCCACGCCTACAGCGGCACGCGAGAGGCCATTCAACGCCAAGGCGCAGGCTCAC             >  1:197597/1‑150
                                                                                                                                                     AGGGCTG‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGGCTCTAGCCCACGCCTACAGCGGCACGCGAGAGGCCATTCAGCGCCAAGGCGCAGGCTCACCCACCAGTTGC  >  1:674048/1‑138
                                                                                                                                                     AGGGCTG‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGGCTCTAGCCCACGCCTACAGCGGCACGCGAGAGGCCATTCAGCGCCAAGGCGCAGGCTCACCCACCAGTTGC  <  2:674048/138‑1
                                                                                                                                                       GGCTG‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGG                                                                         <  1:668555/65‑1
                                                                                                                                                       GGCTG‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGG                                                                         >  2:668555/1‑65
                                                                                                                                                                                                                                                                                                
TGCTGGAGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/189774‑189929
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggctg‑TACAAGCAGCCCTGCAAATCGCTACGTGAACCTGGGGGCCGCTACGCGGCCCTTTTGCGGCTCTAGCCCACGCCTACAGCGGCACGCGAGAGGCCATTCAGCGCCAAGGCGCAGGCTCACCCACCAGTTGC  <  NC_002947/189935‑189805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.