New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 189929	40 (0.760)	3 (0.060)	3/230	NT	7.4%	intergenic (+91/+66)	PP_0165/PP_0166	GGDEF domain‑containing protein/HlyD family secretion protein
	?	NC_002947	= 189935	38 (0.770)					intergenic (+97/+60)	PP_0165/PP_0166	GGDEF domain‑containing protein/HlyD family secretion protein

GATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGATGTCCA  >  NC_002947/189796‑190083                                                                                                                                            |                                                                                                                                                     gATTCAGGGGCAATTGGTGGGTGAGCTTGCGACTTGGCGCTGAGTGGCCTCTAGCGCGCCGCTGTAGGCGTGGGCTAGAGCCGCACAAGGCCCGTGTAGCGACCCCGACGTTCACGCAGCGATTGGCATGCCGGCTGGTGCAGTCATGTc                                                                                                                                            <  2:910457/150‑1 (MQ=255)        gggCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCCGGGCTGCTTGTACAGCCCTGTCGCGACAt                                                                                                                                     >  1:761764/1‑150 (MQ=255)          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagccct                                                                                                                                               <  2:674048‑M2/138‑8 (MQ=255)          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagccct                                                                                                                                               >  1:674048‑M2/1‑131 (MQ=255)          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGa                                                                                                                                   <  2:1077594/150‑1 (MQ=255)          gCAACTGGTGGGTGACCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGa                                                                                                                                   <  1:1178199/150‑1 (MQ=255)            aaCTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCCGGGCTGCTTGTACAGCCCTGTCGCGACATGAgg                                                                                                                                 <  2:761764/150‑1 (MQ=255)            aaCTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAgg                                                                                                                                 <  2:445688/150‑1 (MQ=255)                     gtgAGCCTGCGCCTTGGCGTTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑TACAAgcagccctgcaaatcgctacgtgaacctggg                                                                                                                       >  1:197597‑M2/1‑119 (MQ=255)                     gtgAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGTTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTa                                                                                                                        <  1:124647/150‑1 (MQ=255)                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTaaa                                                                                                                      <  1:813410/146‑1 (MQ=255)                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTaaa                                                                                                                      >  2:813410/1‑146 (MQ=255)                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCaa                                                                                                                  >  1:453196/1‑150 (MQ=255)                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCaa                                                                                                                  >  2:164374/1‑150 (MQ=255)                            tGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAAt                                                                                                                 <  1:106089/150‑1 (MQ=255)                             gcgcCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATg                                                                                                                >  1:1086531/1‑150 (MQ=255)                               gcCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGc                                                                                                              <  2:453196/150‑1 (MQ=255)                                ccTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCg                                                                                                             >  2:1173461/1‑150 (MQ=255)                                 cTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGt                                                                                                                                             <  1:684660/117‑1 (MQ=255)                                 cTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGt                                                                                                                                             >  2:684660/1‑117 (MQ=255)                                        cTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                        >  2:1363618/1‑115 (MQ=255)                                        cTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                        <  1:1363618/115‑1 (MQ=255)                                             tGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGc                                                                                                                             >  2:910593/1‑121 (MQ=255)                                             tGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGc                                                                                                                             <  1:910593/121‑1 (MQ=255)                                                ccTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                        >  1:1310006/1‑107 (MQ=255)                                                ccTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                        <  2:1310006/107‑1 (MQ=255)                                                      gcgTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTgg                                                                                              <  2:675335/143‑1 (MQ=255)                                                      gcgTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTgg                                                                                              >  1:675335/1‑143 (MQ=255)                                                            cGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTcg                                                                                 >  1:470527/1‑150 (MQ=255)                                                                gTAGGCGTGGGATAGAGCCGCAAAAGGGCCGAGTAACGGCCCCAGGGATCACGTAGTGAGTTGCAGGGCGGCTTGTAGAGCCCTGTCGCTACATGAGGCCGCTCCTAAAGCAATGGCGAAAACCGCAGGTTGGCTATCACCGCTCGCGCa                                                                             >  2:520997/1‑150 (MQ=255)                                                                          gCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGa                                                                   >  1:642819/1‑150 (MQ=255)                                                                               agCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAAcgcg                                                              >  2:734142/1‑150 (MQ=255)                                                                                 ccGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagcc                                                                                                                                                 <  1:668555‑M2/65‑6 (MQ=255)                                                                                 ccGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagcc                                                                                                                                                 >  2:668555‑M2/1‑60 (MQ=255)                                                                                         gggCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGAt                                                    <  1:566631/150‑1 (MQ=255)                                                                                                    cGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCa                                         <  1:734142/150‑1 (MQ=255)                                                                                                          ccAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCg                                                  >  2:188188/1‑135 (MQ=255)                                                                                                          ccAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCg                                                  <  1:188188/135‑1 (MQ=255)                                                                                                             ggTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCa                                <  1:918390/150‑1 (MQ=255)                                                                                                              gTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAgg                                       <  2:82645/142‑1 (MQ=255)                                                                                                              gTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAgg                                       >  1:82645/1‑142 (MQ=255)                                                                                                                  aCGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCatgatg                           <  1:832893/150‑1 (MQ=255)                                                                                                                    gTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGt                         >  1:160194/1‑150 (MQ=255)                                                                                                                          aTTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCtt                   <  2:1086531/150‑1 (MQ=255)                                                                                                                            ttGCAGGGCTGCTTGTACAGCGCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGc                 <  2:423887/150‑1 (MQ=255)                                                                                                                               cAGGGCTGCTTGTAcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcg                                                                                                 >  2:1332148‑M2/1‑14 (MQ=255)                                                                                                                               cAGGGCTGCTTGTAcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcg                                                                                                 <  1:1332148‑M2/67‑54 (MQ=255)                                                                                                                                     tgctTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCatga        >  1:48856/1‑150 (MQ=255)                                                                                                                                           tACAGCCCTTTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGTTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGATGTCCa  >  2:764814/1‑150 (MQ=255)                                                                                                                                           tACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGATGTCCa  >  1:1414604/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                     GATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGATGTCCA  >  NC_002947/189796‑190083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.