New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 189929	40 (0.760)	3 (0.060)	3/230	NT	7.4%	intergenic (+91/+66)	PP_0165/PP_0166	GGDEF domain‑containing protein/HlyD family secretion protein
	?	NC_002947	= 189935	38 (0.770)					intergenic (+97/+60)	PP_0165/PP_0166	GGDEF domain‑containing protein/HlyD family secretion protein

AGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGA  >  NC_002947/189780‑190077                                                                                                                                                      |                                                                                                                                                     agaTGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG                                                                                                                                                      >  1:423887‑M1/1‑150 (MQ=255)                 gATTCAGGGGCAATTGGTGGGTGAGCTTGCGACTTGGCGCTGAGTGGCCTCTAGCGCGCCGCTGTAGGCGTGGGCTAGAGCCGCACAAGGCCCGTGTAGCGACCCCGACGTTCACGCAGCGATTGGCATGCCGGCTGGTGCAGTCATGTc                                                                                                                                      <  2:910457/150‑1 (MQ=255)                        gggCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCCGGGCTGCTTGTACAGCCCTGTCGCGACAt                                                                                                                               >  1:761764/1‑150 (MQ=255)                          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagccct                                                                                                                                         >  1:674048‑M2/1‑131 (MQ=255)                          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagccct                                                                                                                                         <  2:674048‑M2/138‑8 (MQ=255)                          gCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGa                                                                                                                             <  2:1077594/150‑1 (MQ=255)                          gCAACTGGTGGGTGACCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGa                                                                                                                             <  1:1178199/150‑1 (MQ=255)                            aaCTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCCGGGCTGCTTGTACAGCCCTGTCGCGACATGAgg                                                                                                                           <  2:761764/150‑1 (MQ=255)                            aaCTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAgg                                                                                                                           <  2:445688/150‑1 (MQ=255)                                     gtgAGCCTGCGCCTTGGCGTTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTG‑TACAAgcagccctgcaaatcgctacgtgaacctggg                                                                                                                 >  1:197597‑M2/1‑119 (MQ=255)                                     gtgAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGTTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTa                                                                                                                  <  1:124647/150‑1 (MQ=255)                                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTaaa                                                                                                                >  2:813410/1‑146 (MQ=255)                                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTaaa                                                                                                                <  1:813410/146‑1 (MQ=255)                                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCaa                                                                                                            >  1:453196/1‑150 (MQ=255)                                           cTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCaa                                                                                                            >  2:164374/1‑150 (MQ=255)                                            tGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAAt                                                                                                           <  1:106089/150‑1 (MQ=255)                                             gcgcCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATg                                                                                                          >  1:1086531/1‑150 (MQ=255)                                               gcCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGc                                                                                                        <  2:453196/150‑1 (MQ=255)                                                ccTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCg                                                                                                       >  2:1173461/1‑150 (MQ=255)                                                 cTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGt                                                                                                                                       >  2:684660/1‑117 (MQ=255)                                                 cTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGt                                                                                                                                       <  1:684660/117‑1 (MQ=255)                                                        cTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                  >  2:1363618/1‑115 (MQ=255)                                                        cTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                  <  1:1363618/115‑1 (MQ=255)                                                             tGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGc                                                                                                                       <  1:910593/121‑1 (MQ=255)                                                             tGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGc                                                                                                                       >  2:910593/1‑121 (MQ=255)                                                                ccTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                  <  2:1310006/107‑1 (MQ=255)                                                                ccTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGa                                                                                                                                  >  1:1310006/1‑107 (MQ=255)                                                                  tctcGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCtt                                                                                                                                                   >  2:378405/1‑88 (MQ=255)                                                                  tctcGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCtt                                                                                                                                                   <  1:378405/88‑1 (MQ=255)                                                                      gcgTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTgg                                                                                        >  1:675335/1‑143 (MQ=255)                                                                      gcgTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTgg                                                                                        <  2:675335/143‑1 (MQ=255)                                                                            cGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTcg                                                                           >  1:470527/1‑150 (MQ=255)                                                                                gTAGGCGTGGGATAGAGCCGCAAAAGGGCCGAGTAACGGCCCCAGGGATCACGTAGTGAGTTGCAGGGCGGCTTGTAGAGCCCTGTCGCTACATGAGGCCGCTCCTAAAGCAATGGCGAAAACCGCAGGTTGGCTATCACCGCTCGCGCa                                                                       >  2:520997/1‑150 (MQ=255)                                                                                          gCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGa                                                             >  1:642819/1‑150 (MQ=255)                                                                                           cTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGgctgc                                                                                                                                                     >  2:1209353/1‑61 (MQ=255)                                                                                           cTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGgctgc                                                                                                                                                     <  1:1209353/61‑1 (MQ=255)                                                                                               agCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAAcgcg                                                        >  2:734142/1‑150 (MQ=255)                                                                                                 ccGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagcc                                                                                                                                           >  2:668555‑M2/1‑60 (MQ=255)                                                                                                 ccGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTAcagcc                                                                                                                                           <  1:668555‑M2/65‑6 (MQ=255)                                                                                                  cGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGtacaagcagccctg                                                                                                                                        <  1:1332148‑M1/67‑15 (MQ=255)                                                                                                  cGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGtacaagcagccctg                                                                                                                                        >  2:1332148‑M1/1‑53 (MQ=255)                                                                                                         gggCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGAt                                              <  1:566631/150‑1 (MQ=255)                                                                                                                    cGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCa                                   <  1:734142/150‑1 (MQ=255)                                                                                                                         cccAGGTTCACGTAGCGATTTGCAGGGCTGcttgtacagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcggctctagcccacgcctacagcggcacgcgagaggccattcaacgccaaggcgcaggctcac                              >  1:197597‑M1/1‑30 (MQ=255)                                                                                                                          ccAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCg                                            >  2:188188/1‑135 (MQ=255)                                                                                                                          ccAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCg                                            <  1:188188/135‑1 (MQ=255)                                                                                                                             ggTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCa                          <  1:918390/150‑1 (MQ=255)                                                                                                                              gTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAgg                                 >  1:82645/1‑142 (MQ=255)                                                                                                                              gTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAgg                                 <  2:82645/142‑1 (MQ=255)                                                                                                                                  aCGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCatgatg                     <  1:832893/150‑1 (MQ=255)                                                                                                                                    gTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGt                   >  1:160194/1‑150 (MQ=255)                                                                                                                                          aTTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCtt             <  2:1086531/150‑1 (MQ=255)                                                                                                                                            ttGCAGGGCTGCTTGTACAGCGCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGc           <  2:423887/150‑1 (MQ=255)                                                                                                                                               cAGGGCTGCTTGTAcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcg                                                                                           <  1:1332148‑M2/67‑54 (MQ=255)                                                                                                                                               cAGGGCTGCTTGTAcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcg                                                                                           >  2:1332148‑M2/1‑14 (MQ=255)                                                                                                                                                aGGGCTGtacaagcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcggctctagcccacgcctacagcggcacgcgagaggccattcagcgccaaggcgcaggctcacccaccagttgc                   <  2:674048‑M1/138‑132 (MQ=255)                                                                                                                                                aGGGCTGtacaagcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcggctctagcccacgcctacagcggcacgcgagaggccattcagcgccaaggcgcaggctcacccaccagttgc                   >  1:674048‑M1/1‑7 (MQ=255)                                                                                                                                                  ggCTGtacaagcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcgg                                                                                          <  1:668555‑M1/65‑61 (MQ=255)                                                                                                                                                  ggCTGtacaagcagccctgcaaatcgctacgtgaacctgggggccgctacgcggcccttttgcgg                                                                                          >  2:668555‑M1/1‑5 (MQ=255)                                                                                                                                                     tgctTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCatga  >  1:48856/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AGATGGGAGTAGGCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGAATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAGCCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCTTGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGA  >  NC_002947/189780‑190077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.