| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 356087 = | 74 (1.410) | 17 (0.350) | 12/230 | NT | 19.9% | coding (120/948 nt) | cbcX | choline/betaine/carnitine ABC transporter substrate‑binding protein |
| ? | NC_002947 | 356108 = | 68 (1.380) | coding (99/948 nt) | cbcX | choline/betaine/carnitine ABC transporter substrate‑binding protein | |||||
TCAGGAGTCCATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑CCGACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/356220‑356087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacatcGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGTGGGTCGCCGGGC > NC_002947/356108‑356254 TCAGGAGTCCATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGG‑TCCAGCCGACATCGGAGAA < 2:1296933/140‑1 CATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGG‑TCCAGCCGACATCGGAGAAGCGTACAGTCTGACATTGC < 2:1093258/150‑1 ATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGTCCAG‑CCGACATCGGAGAAGC < 2:174657/132‑1 ATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑CCGACATC < 1:296362/124‑1 ATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑CCGACATC > 2:296362/1‑124 ATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGG‑TCCAGCCGACATCGGAGAAGC > 1:174657/1‑132 GTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑C < 1:437546/86‑1 GTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑C > 2:437546/1‑86 TTCTCCGATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGA < 1:1296933/140‑1 TCCGATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGTTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCG > 2:633685/1‑150 TCCGATGTCGGCTGGA‑CCGACATCAGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCAGTGATGGACTCCTGAGATATTGTCTTCG > 1:831/1‑150 CGATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGG < 2:1077540/51‑1 CGATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGG > 1:1077540/1‑51 GATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTC < 1:577169/146‑1 GATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTC > 2:577169/1‑146 GATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGAT > 2:1405313/1‑124 GATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGAT < 1:1405313/124‑1 ATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGAT > 1:446150/1‑123 ATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGAT < 2:446150/123‑1 ATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCAT < 1:848541/119‑1 ATGTCGGCTGGA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCAT > 2:848541/1‑119 GA‑CCGACATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGTTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGTGGGTC < 1:633685/150‑1 ATCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGTGGGTCGCCGGGC < 2:852252/150‑1 TCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGT > 1:893538/1‑137 TCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGT < 1:665503/137‑1 TCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGT > 2:665503/1‑137 TCGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGT < 2:893538/137‑1 TCAGGAGTCCATCCATGAAAGGTTCACCCTCGCTGTTACTGGTTGCGTTGCTGTCCGCGCCATTGCTGGCCCAAGCAGCCGAACCCGAGCAATGTCAGACTGTACGCTTCTCCGATGTCGGCTGGA‑CCGACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/356220‑356087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacatcGGAGAAGCGTACAGTCTGACATTGCTCGGGTTCGGCTGCTTGGGCCAGCAATGGCGCGGACAGCAACGCAACCAGTAACAGCGAGGGTGAACCTTTCATGGATGGACTCCTGAGATATTGTCTTCGGGTTCGCGTGGGTCGCCGGGC > NC_002947/356108‑356254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |