| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 497681 = | 52 (0.990) | 6 (0.120) | 6/236 | NT | 11.2% | coding (1550/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 497744 = | 45 (0.890) | coding (1613/2388 nt) | PP_0409 | two‑component system sensor histidine kinase | |||||
TCCCAGACTACACCGTCCCACACTACCTGGCCGTTGCCCAGATGCCGGGCGCTGGCCTTGATATCGGCCCAGCGCTGTTCGCCCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/497831‑497681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497744‑497892 TCCCAGACTACACCGTCCCACACTACCTGGCCGTTGCCCAGATGCCGGGCGCTGGCCTTGATATCGGCCCAGCGCTGTTCGCCCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACC > 1:1376161/1‑150 CCAGACTACACCGTCCCACACTACCTGGCCGTTGCCCAGATGCCGGGCGCTGGCCTTGATATCGGCCCAGCGCTGTTCGCCCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGGCAGGTCCTGCACC > 2:990585/1‑148 CCAGACTACACCGTCCCACACTACCTGGCCGTTGCCCAGATGCCGGGCGCTGGCCTTGATATCGGCCCAGCGCTGTTCGCCCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACC < 1:990585/148‑1 CCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAG > 2:236776/1‑150 GGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGACCAGGTCCTGCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCA > 1:844115/1‑150 GCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGG < 1:236776/150‑1 CCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGGCGCATCCT‑CACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCA > 1:1141817/1‑150 CTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGGCGCATCCT‑CACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGG > 1:1081016/1‑104 CTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGGCGCATCCT‑CACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGG < 2:1081016/104‑1 CCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCG > 2:167766/1‑150 CCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGA > 2:1056620/1‑150 CCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGG < 1:1128176/109‑1 CCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGG > 2:1128176/1‑109 CGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA < 2:220367/150‑1 TCCCAGACTACACCGTCCCACACTACCTGGCCGTTGCCCAGATGCCGGGCGCTGGCCTTGATATCGGCCCAGCGCTGTTCGCCCTGCCGGGTGAGGATGCGCCCCTGCCAGGACCAGTCCTGGTCGCTGGCCAGGGCCAGGTCCTGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/497831‑497681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497744‑497892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |