| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 497681 = | 52 (0.990) | 6 (0.120) | 6/236 | NT | 11.2% | coding (1550/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 497744 = | 45 (0.890) | coding (1613/2388 nt) | PP_0409 | two‑component system sensor histidine kinase | |||||
GTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497596‑497892 | gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCgg > 1:1023683/1‑150 (MQ=255) ctacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAgg > 2:236776‑M1/82‑150 (MQ=255) ttATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAggg < 2:832720/150‑1 (MQ=255) gCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAActccaga < 2:1163941/150‑7 (MQ=255) agaTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTggg > 2:1178698/1‑150 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa < 1:136912/150‑1 (MQ=255) cAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTAGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGat > 1:25330/1‑150 (MQ=255) ccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAg < 2:1392164/150‑1 (MQ=255) ccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAg < 2:1254714/150‑1 (MQ=255) gCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACa > 1:1056554/1‑129 (MQ=255) gCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACa < 2:1056554/129‑1 (MQ=255) aGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGCCCTGGCCAACGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa < 1:602270/150‑1 (MQ=255) gcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATc > 2:522007/1‑150 (MQ=255) cTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc > 1:90599/1‑150 (MQ=255) aCCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGcc > 2:897386/1‑150 (MQ=255) ccccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa > 2:1376161/1‑150 (MQ=255) ccccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa > 2:248584/1‑150 (MQ=255) cGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTgg > 1:1117582/1‑150 (MQ=255) tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGat < 1:1396067/103‑1 (MQ=255) tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGat > 2:1396067/1‑103 (MQ=255) tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTg > 2:652481/1‑118 (MQ=255) tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTg < 1:652481/118‑1 (MQ=255) tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGt < 1:522007/150‑1 (MQ=255) cctgccgggtgaggatgcgcccctgccaggaccagtcctggtcgctggccagggccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAg > 2:236776‑M2/70‑150 (MQ=255) caGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTg < 1:1178698/150‑1 (MQ=255) ggTGCAGGACCTCGCCCTGCCCAGAGACCATGGCTGCTC‑CTGG‑CAGCGGCGCCTGATCACCCGCCAGTGCCAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGCGCCACGGCCAGTTAGTGTGGGGCGGAGACGTCCGGGa > 2:1186560/1‑150 (MQ=255) GGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg < 1:990585‑M1/148‑1 (MQ=255) GGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGa > 1:1376161‑M1/1‑150 (MQ=255) GGTGCAGGACCTGCCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg > 2:990585‑M1/1‑148 (MQ=255) cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCATGTAGTGTGGGACGGTGTAGTCTGGGACATc < 2:168879/150‑1 (MQ=255) ggatgcgcccctgccaggaccagtcctggtcgctggccaggaccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATca > 1:844115‑M2/58‑150 (MQ=255) ctggccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg < 1:945087/150‑1 (MQ=255) ctggccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg > 2:200684/1‑150 (MQ=255) ggccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAggg < 1:897386/150‑1 (MQ=255) gccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa < 2:1335969/110‑1 (MQ=255) gccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa > 1:1335969/1‑110 (MQ=255) gccctggccAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAggag > 2:299813/1‑148 (MQ=255) gcccctgccaggaccagtcctggtcgctggccagggccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAgg < 1:236776‑M2/99‑1 (MQ=255) ccctgccaggaccagtcctggtcgctggccaggggcgcatcctcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCa > 1:1141817‑M2/49‑150 (MQ=255) ctgccaggaccagtcctggtcgctggccaggggcgcatcctcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACgg > 1:1081016‑M2/47‑104 (MQ=255) ctgccaggaccagtcctggtcgctggccaggggcgcatcctcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACgg < 2:1081016‑M2/58‑1 (MQ=255) accagtccTGGTCGCTGGCCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGa < 2:1141817/143‑1 (MQ=255) cAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg > 2:573525/1‑96 (MQ=255) cAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg < 1:573525/96‑1 (MQ=255) cagTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa > 2:1259959/3‑89 (MQ=255) cagTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCa < 1:1259959/87‑1 (MQ=255) tC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTATGGGACATCACACAGGGCAAGCGGGCCGAGctggcgctggcg > 2:1309491/1‑150 (MQ=255) cTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGaa < 2:25330/150‑1 (MQ=255) cTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGaa > 1:220367/1‑150 (MQ=255) cTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGaa < 2:1100030/150‑1 (MQ=255) tGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAg > 1:1171239/1‑150 (MQ=255) aGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa > 2:1414080/1‑54 (MQ=255) aGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa < 1:1414080/54‑1 (MQ=255) gggCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAg < 1:200684/150‑1 (MQ=255) gcATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGcc > 1:1037091/1‑122 (MQ=255) gcATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGcc < 2:1037091/122‑1 (MQ=255) cccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGcgcg > 2:167766‑M2/4‑150 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCgg > 2:1128176‑M2/3‑109 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCgg < 1:1128176‑M2/107‑1 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGa > 2:1056620‑M2/3‑150 (MQ=255) cGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGaa < 2:220367‑M2/149‑1 (MQ=255) | GTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGG‑CAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497596‑497892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |