| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 589980 | 44 (0.840) | 5 (0.100) | 5/234 | NT | 9.8% | coding (101/885 nt) | PP_0500 | dTDP‑4‑rhamnose reductase‑like protein |
| ? | NC_002947 | = 589994 | 50 (1.000) | coding (115/885 nt) | PP_0500 | dTDP‑4‑rhamnose reductase‑like protein | |||||
ATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/589853‑589980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccAGCCGTTCTCGGGCGGGCGCGGTGCCAGGAAAGCGATGTCCTCCTCGGCCCCAAGACGAATCAGCGCTTGCCCGAGGGCATTGCCACCACCCAACAGCATTAGGCGCATACGCATAGAGTCAGCAGATCCGGAGAGGTTGATGAG < NC_002947/589994‑589850 ATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCAGCCGTTCTCGGGC < 1:177579/142‑1ATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCAGCCGTTCTCGGGC > 2:177579/1‑142 AATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCATCCGTTCTCGGGCGGGCGCGGT > 1:1145672/1‑91 AATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCATCCGTTCTCGGGCGGGCGCGGT < 2:1145672/91‑1 GCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCGGTGCCAGGAAAGCGATGTCCTCCTCGGCCCCAAGACGAATCAGCGCTTGCCCGAGGGCATTGCCACCACCCAACAGCATTAGGCGCATACGCATAGAGTCAGCAGATCC > 2:1125927/1‑150 CGCCCAGCCGTTCTCGGGCGGGCGCGGTGCCAGGAAAGCGATGTCCTCCTCGGCCCCAAGACGAATCAGCGCTTGCCCGAGGGCATTGCCAACACCCAACAGCATTAGGCGCATACGCATAGAGTCAGCAGATCCGGAGAGGTTGATGAG > 2:564859/1‑150 ATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/589853‑589980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccAGCCGTTCTCGGGCGGGCGCGGTGCCAGGAAAGCGATGTCCTCCTCGGCCCCAAGACGAATCAGCGCTTGCCCGAGGGCATTGCCACCACCCAACAGCATTAGGCGCATACGCATAGAGTCAGCAGATCCGGAGAGGTTGATGAG < NC_002947/589994‑589850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |