New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 589980 | 44 (0.840) | 5 (0.100) | 5/234 | NT | 9.8% | coding (101/885 nt) | PP_0500 | dTDP‑4‑rhamnose reductase‑like protein |
? | NC_002947 | = 589994 | 50 (1.000) | coding (115/885 nt) | PP_0500 | dTDP‑4‑rhamnose reductase‑like protein |
TCTTTTTTCTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGT > NC_002947/589842‑590127 | tctTTTTTCTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACg > 1:82360/1‑150 (MQ=255) ttttttCTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGAACATGGCTTTACTGGCACCGCGCCCGCCCGAGAACgtc > 1:155396/1‑148 (MQ=255) ctcATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGTTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTgggcg > 2:564859‑M2/1‑145 (MQ=255) atcaACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCagccgttctcgggc > 2:177579‑M1/1‑128 (MQ=255) atcaACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCagccgttctcgggc < 1:177579‑M1/142‑15 (MQ=255) tcCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctc > 1:367447/1‑150 (MQ=255) tcCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctc > 2:1425497/1‑150 (MQ=255) ggATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCAGCCGTTCTCGGGCgggcgcggtgccaggaaagc > 2:1125927‑M2/1‑130 (MQ=255) aTCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctcactca > 1:450352/1‑150 (MQ=255) ctgACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCagcagc < 1:1425497/150‑1 (MQ=255) tgACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAgctgct > 1:680365/1‑150 (MQ=255) gACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTc > 2:1072302/1‑150 (MQ=255) gACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCACTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTc > 1:779047/1‑150 (MQ=255) ctctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGa < 1:666432/150‑1 (MQ=255) tctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAGTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAt > 1:1403589/1‑150 (MQ=255) tctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAt > 2:93762/1‑150 (MQ=255) ctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg < 2:696449/150‑1 (MQ=255) tatgcgtatgcgCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGTCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGa < 1:870373/150‑1 (MQ=255) tacgcgtgtgcgGCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGa > 2:950624/4‑150 (MQ=255) cgtatgcgCCTAATGCTGTTGGGTGGTGGCCCTGCACGCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCAt < 2:1403589/150‑1 (MQ=255) gCAATGCACTCGGGCAAGCGCTGATTCGTCTTGGGGCCGCGGCGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGCACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCt > 1:888246/1‑150 (MQ=255) aaTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCatccgttctcgggcgggcgcggt > 1:1145672‑M1/1‑68 (MQ=255) aaTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCatccgttctcgggcgggcgcggt < 2:1145672‑M1/91‑24 (MQ=255) aTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTAtt < 2:82360/150‑1 (MQ=255) gCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATAGATCTTCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTAc > 2:557128/1‑150 (MQ=255) aaGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGt < 2:1056564/150‑1 (MQ=255) aaGCGCTGATGCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGt > 1:1262947/1‑150 (MQ=255) cTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAg < 1:362586/150‑1 (MQ=255) cTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAg < 1:1372356/150‑1 (MQ=255) tCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGa < 2:1262947/150‑1 (MQ=255) gTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGt < 2:779047/150‑1 (MQ=255) tCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTc < 2:450352/150‑1 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGc > 2:1384751/1‑68 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGc < 1:1384751/68‑1 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg > 2:1161299/1‑87 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg < 1:1161299/87‑1 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg < 1:305085/107‑1 (MQ=255) ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg > 2:305085/1‑107 (MQ=255) ggCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAGGACCAGCGCCCCGACGCGCTCGTCAACCTCACCGTGTACTTCGACTTTGTCCAGTCCGAGTCGGTTAg > 2:1007585/1‑150 (MQ=255) cGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGa > 1:904982/1‑150 (MQ=255) gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag > 2:1205836/1‑150 (MQ=255) gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag < 1:495106/150‑1 (MQ=255) gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag > 2:495106/1‑150 (MQ=255) ggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACtt < 2:1064081/114‑1 (MQ=255) ggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACtt > 1:1064081/1‑114 (MQ=255) gaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAgcgc > 2:212095/1‑150 (MQ=255) aTCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTg > 2:529400/1‑150 (MQ=255) aTCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTg > 2:1088874/1‑150 (MQ=255) gCTTTCCTGGCACCGCGCCCgcccgagaacggctgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcattgccaccacccaacagcattaggcgcatacgcatagagtcagcagatcc > 2:1125927‑M1/1‑20 (MQ=255) tttCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCa > 2:893768/1‑150 (MQ=255) tCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCTCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTCGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAAc < 1:203724/150‑1 (MQ=255) aCCGCGCCCGCCCGAGAACGGATgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcatt > 1:1145672‑M2/1‑23 (MQ=255) aCCGCGCCCGCCCGAGAACGGATgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcatt < 2:1145672‑M2/91‑69 (MQ=255) cgcccgccCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAgcgggcg < 1:1007585/150‑1 (MQ=255) cgcCCagccgttctcgggcgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcattgccaacacccaacagcattaggcgcatacgcatagagtcagcagatccggagaggttgatgag > 2:564859‑M1/1‑5 (MQ=255) cccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGt < 2:367447/150‑1 (MQ=255) ccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGAc < 1:208921/93‑1 (MQ=255) ccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGAc > 2:208921/1‑93 (MQ=255) | TCTTTTTTCTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGT > NC_002947/589842‑590127 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |