New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 589980	44 (0.840)	5 (0.100)	5/234	NT	9.8%	coding (101/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein
	?	NC_002947	= 589994	50 (1.000)					coding (115/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein

CTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGTGGAGCGGTTGGC  >  NC_002947/589850‑590139                                                                                                                                                 |                                                                                                                                                  ctcATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGTTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTgggcg                                                                                                                                              >  2:564859‑M2/1‑145 (MQ=255)             tcCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctc                                                                                                                                  >  1:367447/1‑150 (MQ=255)             tcCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctc                                                                                                                                  >  2:1425497/1‑150 (MQ=255)                ggATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCAGCCGTTCTCGGGCgggcgcggtgccaggaaagc                                                                                                                               >  2:1125927‑M2/1‑130 (MQ=255)                  aTCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCctcactca                                                                                                                             >  1:450352/1‑150 (MQ=255)                       ctgACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCagcagc                                                                                                                        <  1:1425497/150‑1 (MQ=255)                        tgACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAgctgct                                                                                                                       >  1:680365/1‑150 (MQ=255)                         gACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTc                                                                                                                      >  2:1072302/1‑150 (MQ=255)                         gACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCACTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTc                                                                                                                      >  1:779047/1‑150 (MQ=255)                           ctctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGa                                                                                                                    <  1:666432/150‑1 (MQ=255)                            tctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAGTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAt                                                                                                                   >  1:1403589/1‑150 (MQ=255)                            tctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAt                                                                                                                   >  2:93762/1‑150 (MQ=255)                             ctATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg                                                                                                                  <  2:696449/150‑1 (MQ=255)                              tatgcgtatgcgCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGTCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGa                                                                                                                 <  1:870373/150‑1 (MQ=255)                              tacgcgtgtgcgGCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGa                                                                                                                 >  2:950624/4‑150 (MQ=255)                                  cgtatgcgCCTAATGCTGTTGGGTGGTGGCCCTGCACGCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCAt                                                                                                             <  2:1403589/150‑1 (MQ=255)                                                              gCAATGCACTCGGGCAAGCGCTGATTCGTCTTGGGGCCGCGGCGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGCACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCt                                                                                 >  1:888246/1‑150 (MQ=255)                                                                 aTGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTAtt                                                                              <  2:82360/150‑1 (MQ=255)                                                                   gCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATAGATCTTCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTAc                                                                            >  2:557128/1‑150 (MQ=255)                                                                             aaGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGt                                                                  <  2:1056564/150‑1 (MQ=255)                                                                             aaGCGCTGATGCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGt                                                                  >  1:1262947/1‑150 (MQ=255)                                                                                  cTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAg                                                             <  1:362586/150‑1 (MQ=255)                                                                                  cTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAg                                                             <  1:1372356/150‑1 (MQ=255)                                                                                       tCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGa                                                        <  2:1262947/150‑1 (MQ=255)                                                                                         gTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGt                                                      <  2:779047/150‑1 (MQ=255)                                                                                          tCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTc                                                     <  2:450352/150‑1 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGc                                                                                                                                     >  2:1384751/1‑68 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGc                                                                                                                                     <  1:1384751/68‑1 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg                                                                                                                  <  1:1161299/87‑1 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATg                                                                                                                  >  2:1161299/1‑87 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg                                                                                              <  1:305085/107‑1 (MQ=255)                                                                                            ttGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg                                                                                              >  2:305085/1‑107 (MQ=255)                                                                                                ggCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGAGGACCAGCGCCCCGACGCGCTCGTCAACCTCACCGTGTACTTCGACTTTGTCCAGTCCGAGTCGGTTAg                                               >  2:1007585/1‑150 (MQ=255)                                                                                                   cGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGa                                            >  1:904982/1‑150 (MQ=255)                                                                                                       gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag                                        >  2:495106/1‑150 (MQ=255)                                                                                                       gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag                                        >  2:1205836/1‑150 (MQ=255)                                                                                                       gaggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGagcag                                        <  1:495106/150‑1 (MQ=255)                                                                                                         ggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACtt                                                                          <  2:1064081/114‑1 (MQ=255)                                                                                                         ggaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACtt                                                                          >  1:1064081/1‑114 (MQ=255)                                                                                                          gaCATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAgcgc                                     >  2:212095/1‑150 (MQ=255)                                                                                                             aTCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTg                                  >  2:1088874/1‑150 (MQ=255)                                                                                                             aTCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTg                                  >  2:529400/1‑150 (MQ=255)                                                                                                                  tttCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCa                             >  2:893768/1‑150 (MQ=255)                                                                                                                    tCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCTCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTCGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAAc                           <  1:203724/150‑1 (MQ=255)                                                                                                                           aCCGCGCCCGCCCGAGAACGGATgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcatt                                                                               <  2:1145672‑M2/91‑69 (MQ=255)                                                                                                                           aCCGCGCCCGCCCGAGAACGGATgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcatt                                                                               >  1:1145672‑M2/1‑23 (MQ=255)                                                                                                                               cgcccgccCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAgcgggcg                <  1:1007585/150‑1 (MQ=255)                                                                                                                                 cccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGt              <  2:367447/150‑1 (MQ=255)                                                                                                                                  ccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGAc                                                                      <  1:208921/93‑1 (MQ=255)                                                                                                                                  ccgcccgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGAc                                                                      >  2:208921/1‑93 (MQ=255)                                                                                                                                    gcccgAGAACGGCTgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcattgccaccacccaacagcattaggcgcatacgcatagagtcagcagatccggagaggttgat                   >  2:177579‑M2/1‑14 (MQ=255)                                                                                                                                    gcccgAGAACGGCTgggcgcggtgccaggaaagcgatgtcctcctcggccccaagacgaatcagcgcttgcccgagggcattgccaccacccaacagcattaggcgcatacgcatagagtcagcagatccggagaggttgat                   <  1:177579‑M2/142‑129 (MQ=255)                                                                                                                                       cgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg                                                                                              <  2:1194247/64‑1 (MQ=255)                                                                                                                                       cgAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTg                                                                                              >  1:1194247/1‑64 (MQ=255)                                                                                                                                        gagaACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGTGGAGCgg       <  1:1088874/150‑1 (MQ=255)                                                                                                                                          gaACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGTGGAGCGGtt     <  1:1205836/150‑1 (MQ=255)                                                                                                                                             cGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGTGGAGCGGTTGGc  <  1:893768/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CTCATCAACCTCTCCGGATCTGCTGACTCTATGCGTATGCGCCTAATGCTGTTGGGTGGTGGCAATGCCCTCGGGCAAGCGCTGATTCGTCTTGGGGCCGAGGAGGACATCGCTTTCCTGGCACCGCGCCCGCCCGAGAACGGCTGGGCGCCCTCAAGCCTCACTCAGCTGCTCGATGACCATCGCCCCGACGCGCTGGTCAACCTGGCCTATTACTTCGACTGGTTCCAGGCCGAGTCGGTCAGCGAGCAGCGCCTGGCTCAACAGGAGCGGGCGGTGGAGCGGTTGGC  >  NC_002947/589850‑590139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.