New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	660879 =	52 (0.990)	6 (0.120)	6/228	NT	11.4%	intergenic (+8/‑159)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	660923 =	45 (0.920)					intergenic (+52/‑115)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein

CCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661032‑660879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcggccTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTA  >  NC_002947/660923‑661064                                                                                                                                                                                                                                                                                                          CCTCCTTGGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGC                                                                                                                                                    <  1:47775/150‑1   TCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGACCCCGGATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGG                                                                                                                                                  >  1:1085580/1‑150     CTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCC                                                                                                                                                <  2:672683/150‑1     CTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCC                                                                                                                                                >  2:893127/1‑150                                                                                                                GCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGG                                     >  1:77257/1‑150                                                                                                                 CCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGA                                    >  2:258955/1‑150                                                                                                                    CTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGA                                    <  1:955985/147‑1                                                                                                                    CTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGA                                    >  2:955985/1‑147                                                                                                                         ACAAAAGGCAGCACAGGCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGAT                             >  1:48852/1‑149                                                                                                                         ACAAAAGGCAGCACAGGCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGAT                             <  2:48852/149‑1                                                                                                                                                  GGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACAATGGTTTCGATGGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTT   >  2:1107175/1‑150                                                                                                                                                   GAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTA  <  2:591661/150‑1                                                                                                                                                                                                                                                                                                          CCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661032‑660879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcggccTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTA  >  NC_002947/660923‑661064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.