| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 728969 | 55 (1.050) | 6 (0.120) | 6/234 | NT | 10.2% | coding (455/963 nt) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase |
| ? | NC_002947 | = 728995 | 53 (1.060) | coding (481/963 nt) | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase | |||||
GTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/728818‑728969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcaTCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTGGCCACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCG < NC_002947/728995‑728847 GTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTG > 2:83634/1‑150 TGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCA < 2:1026152/150‑1 GCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCATCTGCTCGACCAGCTTGGTCTG > 2:1333309/1‑150 TGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTC < 1:1333309/150‑1 CCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTT > 1:1172145/1‑126 CCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTT < 2:1172145/126‑1 CAAGACCCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTG < 1:1196706/50‑1 CAAGACCCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTG > 2:1196706/1‑50 CCTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTGGCCACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGTACATGGTGCAGCAGCGCGTTGAGCAGGG < 1:604892/150‑1 CTGCATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTGGCCACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGT > 1:945518/1‑150 ATCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTGGCCACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCG > 1:160527/1‑150 GTTGTGCACCCGGCGGCCGGGCATGCCAGCGGCACCCTGCTCAACGCGCTGCTGCACCATGTGCCAGACATCGTCAACGTGCCGCGCGCCGGTATCGTGCACCGCCTGGACAAGGACACCACCGGCCTGATGGTGGTGGCCAAGACCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/728818‑728969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcaTCTGCTCGACCAGCTTGGTCTGCGCCTGCAGGGTCTTGGCCACCACCATCAGGCCGGTGGTGTCCTTGTCCAGGCGGTGCACGATACCGGCGCGCGGCACGTTGACGATGTCTGGCACATGGTGCAGCAGCGCGTTGAGCAGGGTGCCG < NC_002947/728995‑728847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |