| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 856608 | 57 (1.080) | 4 (0.080) | 4/222 | NT | 7.1% | intergenic (+35/+81) | pagL‑I/PP_0738 | lipid A 3‑O‑deacylase/hypothetical protein |
| ? | NC_002947 | = 856642 | 54 (1.140) | intergenic (+69/+47) | pagL‑I/PP_0738 | lipid A 3‑O‑deacylase/hypothetical protein | |||||
TTTGGTTTGCGCTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/856448‑856608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcctgcAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGGGCATTGCCCGCGAATGCAGGTGAATTCAGAGCGCCATTCTGTAATGCAGGCTGTAGCTTTCTACACCATCGTTGGGCTCTTTGATGCCGGCGTTGGAATAGTGAA < NC_002947/856642‑856494 TTTGGTTTGCGCTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATG > 2:20178/1‑150TTTGGTTTGCGCTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATGCGCGGGCAATG > 2:300309/1‑150 GCGCTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCC > 1:446593/1‑150 CTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGC > 2:286514/1‑150 AACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGCAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGG < 1:218236/148‑1 AACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGCAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGG > 2:218236/1‑148 CCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGCAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCA > 1:785775/1‑97 CCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGCAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCA < 2:785775/97‑1 GCAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGGGCATTGCCCGCGAATGCAGGTGAATTCAGAGCGCCATTCTGTAATGCAGGCTGTAGCTTTCTACACCATCGTTGGGCTCTTTTATGCCGGCGTTGGAATAGTGA > 1:834608/1‑150 CAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGGGCATTGCCCGCGAATGCAGGTGAATTCAGAGCGCCATTCTGTAATGCAGGCTGTAGCTTTCTACACCATCGTTGGGCTCTTTGATGCCGGCGTTGGAATAGTGAA < 2:246008/150‑1 TTTGGTTTGCGCTTTGCCGGCGGGCATGAGATTGGGGTGCGGGCGATTCACTATTCCAACGCCGGCATCAAAGAGCCCAACGATGGTGTAGAAAGCTACAGCCTGCATTACAGAATGGCGCTCTGAATTCACCTGCATTCGCGGGCAATGCCCGCTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/856448‑856608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcctgcAGATTACCCAGACCTTTAATGCTGTGGTATTCCGGCAGGAGCGGGCATTGCCCGCGAATGCAGGTGAATTCAGAGCGCCATTCTGTAATGCAGGCTGTAGCTTTCTACACCATCGTTGGGCTCTTTGATGCCGGCGTTGGAATAGTGAA < NC_002947/856642‑856494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |